Repositories list

• htcondor

  Public
  Snakemake profile for HTCondor

  Python

  •

  MIT License

  •17•13•1•0•Updated Nov 7, 2024Nov 7, 2024

• lsf

  Public
  Snakemake profile for running jobs on an LSF cluster

  profilebioinformaticssnakemake+ 6lsfbioinformatics-pipelinesnakemake-pipelinescluster-profileclustersnakemake-profile

  Python

  •

  MIT License

  •22•36•8•1•Updated Jul 29, 2024Jul 29, 2024

• slurm

  Public
  Cookiecutter for snakemake slurm profile

  Python

  •

  MIT License

  •51•126•13•2•Updated Apr 25, 2024Apr 25, 2024

• pbs-torque

  Public
  Python

  •

  MIT License

  •22•16•6•2•Updated Oct 20, 2023Oct 20, 2023

• sge

  Public
  Snakemake profile for the (Sun) Grid Engine queueing system

  Python

  •10•16•0•0•Updated Jul 13, 2023Jul 13, 2023

• generic

  Public
  Python

  •

  MIT License

  •10•8•1•0•Updated Nov 17, 2022Nov 17, 2022

• doc

  Public
  Documentation of the Snakemake-Profiles project.

  MIT License

  •8•53•11•0•Updated Mar 15, 2022Mar 15, 2022

• surfsara-grid

  Public
  This profile configures Snakemake to run on the SURFsara Grid (https://www.surf.nl/en/services-and-products/grid/index.html).

  Python

  •

  MIT License

  •2•4•1•0•Updated May 8, 2018May 8, 2018