WUSM Human Connectome Project

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35 repositories

HCPpipelines
Public
Processing pipelines for the HCP
shell hcp hcp-pipelines
Shell
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Other
•272•546•20•7•Updated Dec 11, 2024Dec 11, 2024
workbench
Public
Connectome Workbench
neuroscience mri nifti cifti gifti c-plus-plus
C++
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GNU General Public License v2.0
•63•191•8•0•Updated Dec 9, 2024Dec 9, 2024
cifti-matlab
Public
MATLAB code for reading and writing CIFTI connectivity files
matlab cifti hcp fmri-cifti-data cifti-format
MATLAB
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Other
•20•65•1•0•Updated Oct 19, 2024Oct 19, 2024
gradunwarp
Public
Gradient Unwarping in Python
Python
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Other
•37•32•3•2•Updated Jun 28, 2024Jun 28, 2024
CiftiLib
Public
C++ Library for reading and writing CIFTI-2 and CIFTI-1 files
c-plus-plus nifti cifti hcp fmri-cifti-data cifti-format
C++
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BSD 2-Clause "Simplified" License
•10•14•1•1•Updated Nov 28, 2023Nov 28, 2023
BALSA
Public
JavaScript
•0•0•0•0•Updated Oct 11, 2023Oct 11, 2023
NHPPipelines
Public
Enhancements of HCP Pipelines for non-human primates
Shell
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Other
•21•26•6•2•Updated Jul 7, 2022Jul 7, 2022
HCPpipelinesXnatPbsJobs
Public
Shell
•2•0•0•0•Updated Nov 13, 2020Nov 13, 2020
StructuralQC
Public
Shell
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Other
•3•3•0•0•Updated Nov 2, 2020Nov 2, 2020
CHPC_QuNex_RunUtils
Public
Scripts and parameters files for running Qu|Nex container on the CHPC
Shell
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BSD 2-Clause "Simplified" License
•0•0•0•0•Updated May 15, 2020May 15, 2020
HCPpipelinesXnatSingularity
Public
1•1•0•0•Updated May 15, 2020May 15, 2020
HCPpipelinesRunUtils
Public
Utilities for running and checking completion status of HCP Pipelines
Shell
•1•1•0•0•Updated May 15, 2020May 15, 2020
wb_shortcuts
Public
Script for common short wb_command sequences
Shell
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MIT License
•0•2•0•0•Updated Nov 19, 2019Nov 19, 2019
HCPpipelinesSingularity
Public
Files related to running the HCP Pipelines using Singularity
Shell
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Other
•2•1•0•0•Updated Sep 30, 2019Sep 30, 2019
HCPpipelinesDocker
Public
Files related to running the HCP Pipelines using Docker
Other
•3•3•1•0•Updated Mar 15, 2019Mar 15, 2019
xnat_pbs_jobs_control
Public
Control files for the scripts in the xnat_pbs_jobs repository
Shell
•1•0•0•0•Updated Oct 31, 2018Oct 31, 2018
xnat_pbs_jobs
Public
Scripts to run HCP Pipelines as XNAT aware PBS scheduled jobs
Shell
•1•1•0•0•Updated Oct 25, 2018Oct 25, 2018
Pipeline_Environment_Setup_Scripts
Public
Shell
•0•0•0•0•Updated Aug 3, 2018Aug 3, 2018
at_cmd_utils
Public
Utility scripts for the at command
Shell
•0•0•0•0•Updated Aug 3, 2018Aug 3, 2018
pbs_utils
Public
PBS Job Scheduler Utility Scripts
Shell
•0•0•0•0•Updated Aug 3, 2018Aug 3, 2018
hcp_functional_qc_xnat_plugin
Public
XNAT pages required for HCP QC as a plugin
Java
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Other
•0•0•0•0•Updated Mar 19, 2018Mar 19, 2018
hcp_functional_qc_tools
Public
Python based scripts required for Functional QC Pipeline (aka Level2QC Pipeline) for HCP-IntraDB
Python
•0•0•0•0•Updated Feb 26, 2018Feb 26, 2018
megconnectome
Public
MEG data processing pipelines for the HCP Young Adult project
MATLAB
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GNU General Public License v3.0
•4•2•0•0•Updated Dec 7, 2017Dec 7, 2017
xnat_utilities
Public
Some utilities for working with XNAT from the command line
Python
•0•2•0•0•Updated Jul 3, 2017Jul 3, 2017
monitor-hcp-pipelines
Public
Python
•1•1•0•0•Updated Aug 24, 2016Aug 24, 2016
get-data-for-vetting
Public
Utility scripts to retrieve data from Connectome DB resources and place them in shared directories for examination and vetting
Shell
•0•0•0•0•Updated Jun 21, 2016Jun 21, 2016
HCP
Public
Main HCP repo, probably mostly python stuff.
Python
•3•5•0•1•Updated Apr 6, 2016Apr 6, 2016
HAWG-examples
Public
HAWG example JSON files
9•0•0•0•Updated Feb 10, 2016Feb 10, 2016
RetinotopySkeleton
Public
Shell
•3•0•0•2•Updated Oct 5, 2015Oct 5, 2015
hcp_functional_qc_pipeline_customizations
Public
HCP Functional QC (aka Level2QC) pipeline
Shell
•2•1•0•0•Updated Jun 24, 2015Jun 24, 2015