Columbia University Zuckerman Institute

All

31 repositories

Links
Public
A curated set of links to other Zuckerman-related organizations on GitHub and to documentation maintained by Research Computing.
links labs cortex axon zuckerman-institute engram zuckerman-researchers
0•1•0•0•Updated Sep 12, 2024Sep 12, 2024
datajoint-churchland
Public
Datajoint pipelines and code for the Churchland lab.
u19moc3 datajoint
Python
•10•4•0•0•Updated Oct 4, 2021Oct 4, 2021
ansible-sbgrid-server
Public
A role to serve software downloaded via the SBGrid consortium over a centralized NFS share. See ansible-sbgrid-client as well.
ansible ansible-role
Shell
•
Other
•0•0•0•0•Updated Aug 5, 2021Aug 5, 2021
datajoint-hillman
Public
Datajoint pipelines and code for the Hillman lab.
datajoint u19moc3
MATLAB
•9•0•0•0•Updated Mar 30, 2021Mar 30, 2021
kilosort-cli
Public
A simple wrapper script setup that facilitates running Kilosort2 on a batch cluster (e.g. PBS, SLURM)
Shell
•
GNU General Public License v2.0
•1•0•0•0•Updated Mar 25, 2021Mar 25, 2021
Kilosort
Public
Fast spike sorting with drift correction for up to a thousand channels
MATLAB
•
GNU General Public License v2.0
•247•0•0•0•Updated Mar 19, 2021Mar 19, 2021
ezvnc
Public
Shell
•
Other
•0•0•0•0•Updated Feb 24, 2021Feb 24, 2021
axon-slurm-customizations
Public
This repository contains all of the scripts that have been written to tailor SLURM to researcher needs at Zuckerman.
jupyter scheduler jupyter-notebook slurm systems-administration mlfq
Shell
•
Other
•0•0•0•0•Updated Dec 18, 2020Dec 18, 2020
sjupyter
Public
Simple script to launch a jupyter notebook as a slurm job
systems-administration
Shell
•2•0•0•0•Updated Dec 18, 2020Dec 18, 2020
ansible-slurm-scratchspace
Public
ansible ansible-role
Shell
•
Other
•0•0•0•0•Updated Dec 18, 2020Dec 18, 2020
gui-demos-python
Public
GUI demos using python packages
datajoint u19moc3
Python
•3•0•2•0•Updated Dec 18, 2020Dec 18, 2020
ansible-automysqlbackup
Public
An Ansible role that installs the automysqlbackup wrapper script.
ansible ansible-role
HTML
•
Other
•0•0•0•0•Updated Dec 3, 2020Dec 3, 2020
ansible-spack
Public
An Ansible role to install Spack.
ansible ansible-role
HTML
•
Other
•7•3•0•0•Updated Dec 3, 2020Dec 3, 2020
ansible-anaconda
Public
ansible ansible-role
Shell
•
MIT License
•0•0•0•0•Updated Dec 3, 2020Dec 3, 2020
ansible-jupyterhub
Public
An Ansible role to install JupyterHub.
ansible ansible-role
Python
•
Other
•0•0•0•0•Updated Dec 3, 2020Dec 3, 2020
ansible-matlab
Public
An Ansible role to install MATLAB.
ansible ansible-role
HTML
•
Other
•0•0•0•0•Updated Dec 3, 2020Dec 3, 2020
ansible-guacamole
Public
ansible ansible-role
HTML
•
MIT License
•0•1•0•0•Updated Dec 2, 2020Dec 2, 2020
ansible-sbgrid-client
Public
A role to serve software downloaded via the SBGrid consortium over a centralized NFS share. See ansible-sbgrid-server as well.
ansible ansible-role
HTML
•
Other
•0•0•0•0•Updated Dec 2, 2020Dec 2, 2020
ansible-novactf
Public
ansible ansible-role
Other
•0•0•0•0•Updated Dec 1, 2020Dec 1, 2020
ansible-janni
Public
ansible ansible-role
Shell
•
Other
•0•0•0•0•Updated Dec 1, 2020Dec 1, 2020
ansible-imod
Public
ansible ansible-role
HTML
•
Other
•0•0•0•0•Updated Dec 1, 2020Dec 1, 2020
ansible-cryosparc
Public
ansible ansible-role
Shell
•
Other
•0•1•0•0•Updated Dec 1, 2020Dec 1, 2020
ansible-cryocare
Public
ansible ansible-role
Shell
•
Other
•0•0•0•0•Updated Dec 1, 2020Dec 1, 2020
cryoCARE_T2T
Public
Singularity image for cryo-CARE
Jupyter Notebook
•
BSD 2-Clause "Simplified" License
•3•0•0•0•Updated Aug 25, 2020Aug 25, 2020
202008_datajoint_matlab_tutorial
Public
u19moc3 datajoint
MATLAB
•1•0•0•0•Updated Aug 11, 2020Aug 11, 2020
git-novice
Public
The Zuckerman Institute's fork of the Software Carpentry introduction to Git for novices.
course
Python
•
Other
•926•1•0•0•Updated Jun 4, 2020Jun 4, 2020
AutoMySQLBackup
Public
A fork and further development of AutoMySQLBackup from sourceforge. http://sourceforge.net/projects/automysqlbackup/
systems-administration
Shell
•
GNU General Public License v2.0
•103•0•0•0•Updated May 18, 2020May 18, 2020
bacula-zabbix
Public
Script and template to monitor backup jobs from Bacula in Zabbix.
systems-administration
Shell
•
Other
•33•0•0•0•Updated Apr 17, 2020Apr 17, 2020
course-website
Public template
Spring 2020 | Python for Neuroscience Data
course
HTML
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MIT License
•108•0•0•0•Updated Apr 9, 2020Apr 9, 2020
PythonDataCourse
Public
[WIP] Course on Python data pipelines
Jupyter Notebook
•38•0•0•0•Updated Apr 6, 2020Apr 6, 2020