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    9 repositories

    • phenix_with_spades

      Public
      Demo to replicate results from submitted article on combining phenix with spades for improved structure refinement
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Oct 1, 2024Oct 1, 2024

    • MDprot

      Public
      A set of Matlab functions to analyze protein structures and molecular dynamics (MD) simulations of proteins
      MATLAB
      •
      Mozilla Public License 2.0
      •3•1•0•0•Updated Jun 20, 2024Jun 20, 2024

    • AlloCraft

      Public
      Allosteric design of proteins using allosteric pathways, stability calculations, and normal mode analysis
      MATLAB
      •
      Mozilla Public License 2.0
      •0•0•0•0•Updated Jun 6, 2024Jun 6, 2024

    • SPaDES_DESIGNS

      Public
      Repo containing demo to recreate Ion Sampling and designs discussed in 2023 Rosetta SPaDES submission
      Python
      •0•1•0•0•Updated Apr 22, 2024Apr 22, 2024

    • Dimeric_MultiDomain_Biosensor_Builder

      Public
      Assembly procotol to construct dimeric chimeras built from diverse structural native monomeric units, coupling orthgonal input/output signals.
      Roff
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 17, 2024Apr 17, 2024

    • biophysics

      Public
      Library and tools for parsing and modifying biophysical files.
      D
      •
      Mozilla Public License 2.0
      •1•1•0•0•Updated Jan 15, 2024Jan 15, 2024

    • CAPSens_design

      Public
      Python
      •0•1•0•0•Updated Mar 7, 2023Mar 7, 2023

    • AlloDy

      Public
      Analysis of molecular dynamics trajectories of proteins, with a focus on allosteric pathways and ensemble differences
      MATLAB
      •
      Mozilla Public License 2.0
      •1•4•0•0•Updated Feb 1, 2023Feb 1, 2023

    • QUESTS

      Public
      Quaternary receptor state design for signaling selectivity
      Python
      •0•2•0•0•Updated Oct 10, 2022Oct 10, 2022