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    89 repositories

    • Haploblock_Clusters

      Public
      Jupyter Notebook
      •
      MIT License
      •2•1•0•0•Updated Oct 27, 2024Oct 27, 2024

    • biobank_scale_tools

      Public
      MIT License
      •0•0•0•0•Updated Sep 26, 2024Sep 26, 2024

    • Mimic

      Public
      Generates simulated ONT metegenomic samples based off existing microbiome sample abundances
      bioinformaticsmetagenomicsont
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 12, 2024Sep 12, 2024

    • AMRdiscover

      Public
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Sep 2, 2024Sep 2, 2024

    • starfishDiscovery

      Public
      R
      •
      MIT License
      •3•1•0•1•Updated Aug 30, 2024Aug 30, 2024

    • MoVana

      Public
      WDL
      •
      MIT License
      •0•0•0•0•Updated Aug 30, 2024Aug 30, 2024

    • SVeedy

      Public
      R
      •
      MIT License
      •4•2•0•0•Updated Aug 30, 2024Aug 30, 2024

    • SpikeVarTykeVar

      Public
      Python
      •
      MIT License
      •5•8•0•0•Updated Aug 30, 2024Aug 30, 2024

    • tandemrepeats

      Public
      Tandem Repeats Team -- 2024 SVCC Hackathon
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Aug 30, 2024Aug 30, 2024

    • LLM_SVs

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 29, 2024Aug 29, 2024

    • PIBP

      Public
      MIT License
      •0•0•0•0•Updated Jul 24, 2024Jul 24, 2024

    • VarClust

      Public
      A Python package for clustering of single nucleotide variants from high-through seqencing data.
      Python
      •
      Other
      •3•0•0•0•Updated May 23, 2024May 23, 2024

    • NIST-GREX

      Public
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated May 5, 2024May 5, 2024

    • isocomp

      Public
      Isocomp provides tools to compare any number of transcriptome assemblies (GTF + fasta) from long read RNAseq
      rnaseqpacbiotranscriptomicsoxford-nanoporeontlong-read-sequencing
      HTML
      •
      MIT License
      •10•2•4•0•Updated May 3, 2024May 3, 2024

    • SVHack_metagenomics

      Public
      Everything is bigger in Texas: Pan-Structural Variation hackathon in the Cloud!
      Jupyter Notebook
      •
      MIT License
      •0•2•0•0•Updated May 3, 2024May 3, 2024

    • SVHack_assemblyvmapping

      Public
      MIT License
      •2•2•1•0•Updated May 3, 2024May 3, 2024

    • SVHack_Mendelian

      Public
      Python
      •
      MIT License
      •2•4•0•1•Updated May 3, 2024May 3, 2024

    • PhytoKmerCNV

      Public
      Shell
      •
      MIT License
      •0•6•0•0•Updated May 3, 2024May 3, 2024

    • VariantSurvival

      Public
      VariantSurvival a Shiny app/ R package to identify genotype-treatment response
      R
      •
      MIT License
      •2•1•3•2•Updated Mar 12, 2024Mar 12, 2024

    • DMDL_manuscript

      Public
      TeX
      •
      MIT License
      •0•0•0•0•Updated Nov 27, 2023Nov 27, 2023

    • virussusceptibility

      Public
      Jupyter Notebook
      •
      MIT License
      •1•2•0•0•Updated Nov 9, 2023Nov 9, 2023

    • graphbasedtuning

      Public
      Jupyter Notebook
      •
      MIT License
      •0•2•0•0•Updated Nov 9, 2023Nov 9, 2023

    • vcfs2kgs

      Public
      Jupyter Notebook
      •
      MIT License
      •1•2•0•0•Updated Oct 22, 2023Oct 22, 2023

    • kgbasedvalidation

      Public
      Jupyter Notebook
      •
      MIT License
      •0•2•3•0•Updated Oct 21, 2023Oct 21, 2023

    • deeplearningmetagenomics

      Public
      Understanding relationships between complex combinations of OTUs and chronic disease
      Python
      •
      MIT License
      •1•1•0•0•Updated Oct 20, 2023Oct 20, 2023

    • CI4CCREFS

      Public
      Data Management for Transformer Models -- References
      MIT License
      •0•1•0•0•Updated Sep 7, 2023Sep 7, 2023

    • SVHack_Pangenomics

      Public
      MIT License
      •0•2•0•0•Updated Sep 1, 2023Sep 1, 2023

    • SVHack_transcriptome

      Public
      MIT License
      •1•0•0•1•Updated Aug 30, 2023Aug 30, 2023

    • SVHack_HG002Mosaic

      Public
      MIT License
      •0•1•0•0•Updated Aug 29, 2023Aug 29, 2023

    • Disease_subtyping_knowledge_graph

      Public
      MIT License
      •0•1•0•0•Updated Jan 5, 2023Jan 5, 2023