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    33 repositories

    • hackseqRNA

      Public
      hackseqRNA <- hackseq + RNA.society2020
      2•4•10•1•Updated Apr 5, 2020Apr 5, 2020

    • hs19-pop

      Public
      R
      •2•0•3•1•Updated Nov 30, 2019Nov 30, 2019

    • hs19-var

      Public
      Visualizing single-cell RNA-seq experiments at a life-size scale in 3-D
      HTML
      •5•3•4•0•Updated Nov 8, 2019Nov 8, 2019

    • hs19-flu

      Public
      R
      •5•1•1•1•Updated Oct 22, 2019Oct 22, 2019

    • hs19-trends

      Public
      hackathon project on the trends in bioinformatics
      HTML
      •3•1•1•0•Updated Oct 22, 2019Oct 22, 2019

    • hs19-biovis

      Public
      Python
      •1•0•1•0•Updated Oct 20, 2019Oct 20, 2019

    • hackseq19

      Public
      hackseq 2019 - [*]-omics hackathon. Vancouver, BC
      GNU General Public License v3.0
      •5•9•2•0•Updated Oct 20, 2019Oct 20, 2019

    • hs19-deep

      Public
      Python
      •2•1•1•1•Updated Oct 19, 2019Oct 19, 2019

    • hs19-talr

      Public
      TALR: Targeted Assembly of Linked Reads
      0•0•0•0•Updated Oct 18, 2019Oct 18, 2019

    • hs19-game

      Public
      0•0•0•0•Updated Oct 11, 2019Oct 11, 2019

    • wdnn

      Public
      Wide and Deep Neural Net for predicting TB resistance from genotypic data
      Python
      •13•1•0•0•Updated Feb 24, 2019Feb 24, 2019

    • 2017_project_5

      Public archive
      Developing advanced R tutorials for genomic data analysis
      HTML
      •
      MIT License
      •2•1•9•0•Updated Jan 26, 2019Jan 26, 2019

    • modular-assembly-hs18

      Public
      Mix and match modular genome assembler components
      bioinformaticsgenomebioinformatics-pipelinegenome-assemblygenome-assembly-evaluationhackseq
      Makefile
      •
      MIT License
      •9•8•2•1•Updated Oct 22, 2018Oct 22, 2018

    • hackseq18

      Public
      hackseq 2018 - [*]-omics hackathon. Vancouver, BC
      The Unlicense
      •0•7•1•0•Updated Oct 17, 2018Oct 17, 2018

    • hackseq_graphics

      Public
      Graphics for hackseq organizations
      The Unlicense
      •0•0•0•0•Updated Oct 17, 2018Oct 17, 2018

    • hs18

      Public
      hackseq18 sidesite
      CSS
      •
      MIT License
      •153•5•0•2•Updated Oct 16, 2018Oct 16, 2018

    • tara-cyc-hs18

      Public
      HTML
      •3•3•3•0•Updated Oct 14, 2018Oct 14, 2018

    • hackseq_2017

      Public
      Public files and discussions about hackseq 2017
      0•3•5•0•Updated Nov 21, 2017Nov 21, 2017

    • vasco

      Public
      Visualization of single cell RNA-seq data from tens of thousands of cells in real time
      R
      •3•6•16•0•Updated Oct 23, 2017Oct 23, 2017

    • 2017_project_9

      Public
      Using CollapseTree with Taxonomic Metadata
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 23, 2017Oct 23, 2017

    • 2017_project_8

      Public
      Analysis of tested guide RNA’s used for gene editing via CRISPR to predict optimal future guide sequences
      Jupyter Notebook
      •
      MIT License
      •0•3•0•0•Updated Oct 22, 2017Oct 22, 2017

    • phytools

      Public
      R
      •56•0•0•0•Updated Oct 18, 2017Oct 18, 2017

    • 2017_project_7

      Public
      Improving multi-locus sequence typing software
      MIT License
      •0•0•0•0•Updated Oct 10, 2017Oct 10, 2017

    • 2016_project_2

      Public
      Design a tool to optimize the parameters of any command line tool
      HTML
      •
      MIT License
      •6•2•2•0•Updated Sep 6, 2017Sep 6, 2017

    • hackseq_projects_2017

      Public
      1•6•9•0•Updated Aug 2, 2017Aug 2, 2017

    • October_2016

      Public
      Planning repository for Genomics Hackathon in Vancouver
      R
      •
      Creative Commons Zero v1.0 Universal
      •7•6•0•2•Updated Feb 24, 2017Feb 24, 2017

    • 2016_project_4

      Public
      Pseudo-WGS variant calling for common cell types aggregating ChIP-seq, RNA-seq and DHS from ENCODE and Roadmap Epigenomics data
      Jupyter Notebook
      •1•2•1•0•Updated Oct 18, 2016Oct 18, 2016

    • 2016_project_8

      Public
      Explore the use of 10x Genomics' Linked-Reads to unlock currently inaccessible parts of the genome
      Python
      •1•1•1•0•Updated Oct 18, 2016Oct 18, 2016

    • Indicator_contig_predictor

      Public
      A two-way classifier to characterize metagenomes based on short and long read technologies
      Python
      •1•1•0•0•Updated Oct 17, 2016Oct 17, 2016

    • 2016_project_5

      Public
      Evaluating epigenetic modifications in ChIP-seq and methylation data across cell types and states.
      HTML
      •
      BSD 2-Clause "Simplified" License
      •1•1•5•0•Updated Oct 17, 2016Oct 17, 2016