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    34 repositories

    • LaChance_Hasselmo_POR_RSC

      Public
      Code for LaChance and Hasselmo, 2024
      Python
      •0•0•0•0•Updated Aug 29, 2024Aug 29, 2024

    • MS-GABAergic-project

      Public
      Code for Robinson et al., 2024
      0•0•0•0•Updated Jul 13, 2024Jul 13, 2024

    • masked_rpm

      Public
      Python
      •1•0•0•0•Updated Sep 14, 2023Sep 14, 2023

    • Programming-iterview

      Public
      A simple jupyter notebook to test the undergrads' programming skills.
      Jupyter Notebook
      •0•0•0•0•Updated Mar 3, 2023Mar 3, 2023

    • CMBHOME

      Public
      MATLAB Package for Neural Data
      cmbhome
      MATLAB
      •12•12•5•0•Updated Jan 5, 2023Jan 5, 2023

    • EgocentricBoundaryCells

      Public
      Matlab code for egocentric boundary cell identification in freely behaving animals
      MATLAB
      •
      GNU General Public License v3.0
      •5•7•1•0•Updated Dec 27, 2022Dec 27, 2022

    • RodentReconstructorUI

      Public
      WIP ui for the 3D tracking pipeline
      Python
      •0•0•0•0•Updated Jan 21, 2022Jan 21, 2022

    • pippin

      Public
      PoInt Process Neuron
      matlabneuroscience-methodscmbhome
      MATLAB
      •2•1•0•0•Updated Dec 7, 2021Dec 7, 2021

    • ImageJ-Automated-Cell-Counter-Algorithm

      Public
      An algorithm that facilitates cell counting via NIH ImageJ software
      1•0•0•0•Updated Feb 13, 2021Feb 13, 2021

    • neural-decoder

      Public
      Produces a model of the relationship between an extrinisic observable signal and an intrinsic covarying spike train
      cmbhomeratcatchermtoolsex-gaussian
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 18, 2020Aug 18, 2020

    • light-modulation

      Public
      determining whether firing rate is modulated by light/dark conditions
      cmbhomeratcatchermtools
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 2, 2020Jun 2, 2020

    • RatCatcher

      Public
      A general tool for passing data to the cluster
      scccmbhome
      MATLAB
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated May 26, 2020May 26, 2020

    • MLE-time-course

      Public
      Estimate the bandwidth parameter for smoothing spike-train data.
      cmbhomeratcatcherbandwidth-estimatormtools
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 12, 2020May 12, 2020

    • CellSorter

      Public
      Classification using UMAP and kmeans
      cmbhomeratcatchermtools
      MATLAB
      •
      GNU General Public License v3.0
      •2•2•0•0•Updated Apr 13, 2020Apr 13, 2020

    • exp-decay-models

      Public
      find conductance-based models that satisfy exponential decay in firing rate
      xolotlmtools
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 27, 2020Mar 27, 2020

    • ln-model-of-mec-neurons

      Public
      Code implements the LN model used to describe spike trains of MEC neurons based on the animal's position, head direction, speed, and theta phase information. Used in Hardcastle et al., 2017.
      cmbhomeratcatchermtools
      MATLAB
      •17•0•0•0•Updated Mar 19, 2020Mar 19, 2020

    • parameter-space-neural-models

      Public
      Exploring the parameter spaces of neural models
      review
      TeX
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 19, 2020Mar 19, 2020

    • BandwidthEstimator

      Public
      Estimate optimal bandwidth parameter for spike train smoothing using MLE leave-one-out cross-validation.
      cmbhomeratcatchermtools
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 4, 2020Mar 4, 2020

    • BeEPy

      Public
      Behavioral + electrophysiology analyses in python
      Python
      •0•0•0•0•Updated Feb 13, 2020Feb 13, 2020

    • ex-gaussian

      Public
      Probability densities for exponentially-modified gaussian distributions
      MATLAB
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Jan 10, 2020Jan 10, 2020

    • hasselmo-tracking

      Public
      fundamental algorithm of neocortical function -- no big deal
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 29, 2019Oct 29, 2019

    • synaptiplicative-response

      Public
      xolotlxgridxfit
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 17, 2019Sep 17, 2019

    • KiloPlex

      Public
      spike-sortingratcatcherkilosortoffline-sortingplexon
      C
      •
      GNU General Public License v3.0
      •0•3•0•0•Updated Jul 2, 2019Jul 2, 2019

    • FIt-SNE

      Public
      Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)
      C++
      •
      Other
      •107•0•0•0•Updated May 17, 2019May 17, 2019

    • Kilosort2

      Public
      Fast spike sorting with drift correction for up to a thousand channels
      MATLAB
      •
      GNU General Public License v2.0
      •248•0•0•0•Updated Apr 19, 2019Apr 19, 2019

    • knowledge-base

      Public
      repository of documentation for the hasselmo lab
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 8, 2019Mar 8, 2019

    • tsne-wrappers

      Public
      MATLAB wrappers for several commonly used t-SNE implementations
      C++
      •2•0•0•0•Updated Feb 15, 2019Feb 15, 2019

    • MagicMaze

      Public
      arduino
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Feb 1, 2019Feb 1, 2019

    • InVitro

      Public
      Standard matlab toolbox for analyzing invitro data
      MATLAB
      •3•0•1•0•Updated Aug 14, 2018Aug 14, 2018

    • Speed_Coding

      Public
      MATLAB
      •0•0•0•0•Updated Dec 14, 2017Dec 14, 2017