Repositories list

• intermine-scripts

  Public
  All scripts that used to be in the main intermine repository in bio/scripts and intermine/scripts

  PLpgSQL

  •

  GNU Lesser General Public License v2.1

  •10•0•0•0•Updated Apr 17, 2018Apr 17, 2018

• medicmine

  Public
  MedicMine - an InterMine with Medicago truncatula genomic data

  bioinformaticsgenomicsbiological-data-analysis+ 2interminegenomics-visualization

  Java

  •0•0•0•0•Updated Apr 13, 2018Apr 13, 2018

• medicmine-bio-sources

  Public
  Data Sources for MedicMine - an InterMine with Medicago truncatula genomic data

  Java

  •0•0•0•0•Updated Apr 12, 2018Apr 12, 2018

• intermine

  Public
  This is the code base for MedicMine, a data warehouse system based on InterMine and used in MTGD, the Medicago truncatula Genome Database.

  bioinformaticstomcatdata-visualization+ 5data-warehouseinterminewebservicesmedicagojava

  Java

  •

  Other

  •347•0•2•2•Updated Apr 12, 2018Apr 12, 2018

• intermine-search-drupal

  Public
  Drupal module to enable searching one or more mine instances using the InterMine Search API

  drupaldrupal-modulesintermine-search+ 1intermine-api

  CSS

  •

  GNU Lesser General Public License v2.1

  •1•1•1•0•Updated Mar 18, 2018Mar 18, 2018

• AraPheno

  Public
  AraPheno source code for http://arapheno.1001genomes.org

  Python

  •9•0•0•0•Updated Mar 6, 2018Mar 6, 2018

• medicago-tripal

  Public
  Drupal/Tripal code for the MedicagoGenome.org site (MTGD)

  drupalgmodchado+ 1tripal

  PHP

  •

  GNU General Public License v2.0

  •0•0•1•0•Updated Feb 21, 2018Feb 21, 2018

• eucap

  Public
  EuCAP, a Eukaryotic Community Annotation Package (adapted from the implementation developed for the Rice Genome Annotation Project)

  mysqlperl-cgiarchive+ 3medicagoeukaryotescommunity-annotation

  Perl

  •

  Other

  •0•1•0•0•Updated Jan 19, 2018Jan 19, 2018

• lis_context_viewer

  Public
  A web-app that visualizes genomic context data provided by third party services.

  TypeScript

  •

  GNU General Public License v3.0

  •10•0•0•0•Updated Nov 20, 2017Nov 20, 2017

• jbrowse

  Public
  A modern genome browser built with JavaScript and HTML5.

  JavaScript

  •

  GNU Lesser General Public License v2.1

  •199•0•0•0•Updated May 4, 2017May 4, 2017

• medicago-theme

  Public
  MedicagoGenome.org Theme, a Bootstrap 3 theme based on http://drupal.org/project/bootstrap.

  tripaldrupalsubtheme+ 2bootstrap-frameworkmedicago-theme

  CSS

  •0•0•0•0•Updated May 2, 2017May 2, 2017

• MTGD

  Public
  MTGD meta repo to store custom configs

  ApacheConf

  •0•0•0•0•Updated Apr 25, 2017Apr 25, 2017

• legfed-drupal-demo

  Public
  Drupal instance demonstrating Araport File Browser app connected to LegFed data located on Cyverse Data Store

  PHP

  •0•0•0•0•Updated Mar 31, 2016Mar 31, 2016

• file-browser-app-drupal

  Public
  Drupal shim for JavaScript based File Browser app (developed by Araport)

  0•0•0•0•Updated Mar 31, 2016Mar 31, 2016

• file-browser-app

  Public
  Javascript File Browser app powered by Agave

  JavaScript

  •1•0•0•0•Updated Mar 31, 2016Mar 31, 2016