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    25 repositories

    • timm-ctranspath

      Public
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Sep 24, 2024Sep 24, 2024

    • datasheets-for-datasets

      Public
      Python
      •0•0•0•1•Updated Sep 18, 2024Sep 18, 2024

    • dinov2

      Public
      PyTorch code and models for the DINOv2 self-supervised learning method.
      Jupyter Notebook
      •
      Apache License 2.0
      •781•0•0•0•Updated Aug 16, 2024Aug 16, 2024

    • condor

      Public
      condor template examples
      Shell
      •1•0•0•0•Updated Aug 2, 2024Aug 2, 2024

    • TransPath

      Public
      Python
      •
      GNU General Public License v3.0
      •32•1•0•0•Updated Jul 2, 2024Jul 2, 2024

    • luna

      Public
      Scripts for data processing
      Jupyter Notebook
      •
      Apache License 2.0
      •10•39•2•0•Updated Jun 6, 2024Jun 6, 2024

    • snakemake-htcondor

      Public
      Snakemake profile for HTCondor
      Python
      •
      MIT License
      •17•0•0•0•Updated Mar 29, 2024Mar 29, 2024

    • tiling

      Public
      Pathology slide tiling CLI tool
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 6, 2024Feb 6, 2024

    • tiling-nf

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 30, 2024Jan 30, 2024

    • extract-nf

      Public
      Nextflow module for extracting tables from dremio
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 26, 2024Jan 26, 2024

    • dremio-connector

      Public
      Toolkit for pulling/pushing data to dremio
      Apache License 2.0
      •0•0•0•0•Updated Jan 26, 2024Jan 26, 2024

    • clam-nf

      Public
      CLAM nextflow workflow
      Nextflow
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 12, 2024Jan 12, 2024

    • CLAM

      Public
      Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
      Python
      •
      GNU General Public License v3.0
      •347•0•0•1•Updated Jan 12, 2024Jan 12, 2024

    • oncofusion-nf

      Public
      Oncofusion nextflow pipeline
      Nextflow
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 11, 2024Jan 11, 2024

    • docker

      Public
      docker containers for MIND environment
      Groovy
      •0•0•0•0•Updated Jan 10, 2024Jan 10, 2024

    • luna-ml

      Public
      Torch Hub for Machine Learning in Computational Oncology
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 16, 2023Aug 16, 2023

    • nifi

      Public
      Apache Nifi Service
      Makefile
      •0•0•0•1•Updated Nov 11, 2022Nov 11, 2022

    • mskvfs

      Public
      Go
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Aug 29, 2022Aug 29, 2022

    • luna-waystation

      Public
      A service to route tabular data to parquet datasets on S3
      parquetdataset-generationflask-restful
      Python
      •0•0•0•0•Updated May 11, 2022May 11, 2022

    • dask-docker

      Public
      Docker images for dask
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •148•0•0•0•Updated Jun 17, 2021Jun 17, 2021

    • graph-db

      Public
      Integrated labeled property graph generation using neo4j
      Python
      •
      Other
      •0•0•0•0•Updated May 6, 2021May 6, 2021

    • cerr-docker

      Public
      Run the Octave-CERR implementation in a docker container
      Dockerfile
      •2•1•0•0•Updated Apr 26, 2021Apr 26, 2021

    • HistomicsTK

      Public
      A Python toolkit for pathology image analysis algorithms.
      Python
      •
      Apache License 2.0
      •116•0•0•0•Updated Feb 24, 2021Feb 24, 2021

    • nifi-registry

      Public
      NiFi Registry setup
      Makefile
      •0•0•0•0•Updated Jun 5, 2020Jun 5, 2020

    • cli

      Public
      Python
      •0•0•0•0•Updated May 20, 2020May 20, 2020