Bump Mamba to v1.4.9 in CI script #337
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: CI (Conda/PyTest) | |
on: | |
push: | |
paths-ignore: | |
- 'README.md' | |
pull_request: | |
types: | |
- opened | |
- edited | |
- synchronize | |
paths-ignore: | |
- 'README.md' | |
jobs: | |
build: | |
name: test (${{ matrix.os }}, ${{ matrix.python-version }}) | |
runs-on: ${{ matrix.os }} | |
defaults: | |
run: | |
shell: bash -l {0} | |
strategy: | |
fail-fast: true | |
matrix: | |
os: ['ubuntu-latest', 'macos-latest'] | |
python-version: ['3.10'] # ['3.8', '3.10'] | |
steps: | |
- uses: actions/checkout@v2 | |
- uses: conda-incubator/setup-miniconda@v2 | |
with: | |
auto-update-conda: false | |
python-version: ${{ matrix.python-version }} | |
miniconda-version: "latest" | |
mamba-version: "1.4.9" | |
channels: conda-forge,bioconda | |
channel-priority: true | |
auto-activate-base: false | |
environment-file: environment.yml | |
activate-environment: bakta | |
# - name: Install DeepSig | |
# if: ${{ matrix.os == 'ubuntu-latest' && matrix.python-version == '3.8'}} | |
# run: conda install numpy=1.23 keras=2.4.3 tensorflow=2.2.0 chardet deepsig | |
- name: Install PyTest | |
run: conda install pytest | |
- name: Conda info | |
run: | | |
conda info | |
conda list | |
conda config --show | |
printenv | sort | |
- name: Run PyTest | |
if: ${{ matrix.os == 'ubuntu-latest' || matrix.python-version == '3.10'}} | |
run: pytest |