Merge pull request #200 from pangenome/update_odgi #664
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| on: [ push ] | |
| name: build and test | |
| jobs: | |
| build_and_test: | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Install required packages | |
| run: sudo apt-get update && sudo apt-get install -y | |
| git | |
| bash | |
| cmake | |
| make | |
| g++ | |
| python3-dev | |
| libatomic-ops-dev | |
| gcc-multilib | |
| autoconf | |
| libgsl-dev | |
| zlib1g-dev | |
| libzstd-dev | |
| libjemalloc-dev | |
| - name: Init and update submodules | |
| run: git submodule update --init --recursive | |
| - name: Build smoothxg | |
| run: cmake -H. -DCMAKE_BUILD_TYPE=Debug -Bbuild && cmake --build build -- -j 2 | |
| - name: Run tests | |
| run: ctest --test-dir build -E odgi-test --verbose |