Merge pull request #170 from pangenome/odgi_sort_layout_powerup · pangenome/smoothxg@1c0b639

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Merge pull request #170 from pangenome/odgi_sort_layout_powerup

update odgi with faster sort and layout commands

AndreaGuarracino authored Sep 15, 2022

2 parents 2e869a4 + 256ab8c commit 1c0b639

deps/odgi

Submodule odgi updated 31 files

+3 −1		CMakeLists.txt
+ −		docs/img/DRB1-3123.og.O.png
+5 −0		docs/rst/commands/odgi_draw.rst
+8 −4		docs/rst/commands/odgi_extract.rst
+1 −2		docs/rst/commands/odgi_flip.rst
+1 −1		docs/rst/commands/odgi_paths.rst
+1 −1		docs/rst/commands/odgi_stats.rst
+10 −1		docs/rst/commands/odgi_viz.rst
+18 −0		docs/rst/tutorials/exploratory_analysis.rst
+1 −0		src/algorithms/atomic_image.hpp
+9 −4		src/algorithms/draw.cpp
+4 −2		src/algorithms/draw.hpp
+51 −43		src/algorithms/flip.cpp
+3 −1		src/algorithms/flip.hpp
+26 −0		src/algorithms/path_length.cpp
+18 −0		src/algorithms/path_length.hpp
+7 −2		src/algorithms/path_sgd.cpp
+6 −1		src/algorithms/path_sgd_layout.cpp
+7 −5		src/algorithms/procbed.cpp
+14 −11		src/algorithms/subgraph/extract.cpp
+5 −1		src/algorithms/subgraph/extract.hpp
+14 −2		src/algorithms/untangle.cpp
+5 −3		src/subcommand/degree_main.cpp
+25 −11		src/subcommand/depth_main.cpp
+73 −3		src/subcommand/draw_main.cpp
+236 −125		src/subcommand/extract_main.cpp
+4 −3		src/subcommand/flip_main.cpp
+2 −2		src/subcommand/paths_main.cpp
+8 −6		src/subcommand/position_main.cpp
+14 −7		src/subcommand/stats_main.cpp
+528 −383		src/subcommand/viz_main.cpp

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