Inctyper

About

A simple tool for identifying plasmid inc type markers in assembled genomes. The markers are source from the plasmidfinder database.

Installing

• Install docker
• Clone the repository.
• Inside the repository run docker build --rm -t inctyper .

Running

Arguments

1. The path to the FASTA file
2. The NCBI taxonomic code for the genus of the organism.

Example

docker run --rm -v $PWD:/data inctyper /data/my_klebsiella_genome.fasta 570