email sample list in error mail

patidarr · Sep 13, 2016 · 0aecdc7 · 0aecdc7
1 parent f24a9bd
commit 0aecdc7
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/config/config_cluster.json b/config/config_cluster.json
@@ -83,6 +83,6 @@
 		"job_igvtools"   : "-l nodes=1:ppn=01,mem=10gb,walltime=96:00:00",
 		"job_novoalign1" : "-l nodes=2:ppn=16,mem=47gb,walltime=96:00:00",
 		"job_novoalign"  : "-l nodes=1:ppn=16,mem=47gb,walltime=96:00:00",
-		"job_deFuse"     : "-l nodes=tghighmem-01:ppn=26,mem=200gb,walltime=96:00:00"
+		"job_deFuse"     : "-q hmem -l nodes=1:ppn=16,mem=200gb,walltime=96:00:00"
 	}
 }
diff --git a/ngs_pipeline.snakefile b/ngs_pipeline.snakefile
@@ -301,7 +301,7 @@ onerror:
 	shell("find .snakemake/ -group $USER -exec chgrp -f {GROUP} {{}} \;")
 	shell("find . -group $USER -exec chgrp -f {GROUP} {{}} \;")
 	shell("find . \( -type f -user $USER -exec chmod g+rw {{}} \; \) , \( -type d -user $USER -exec chmod g+rwx {{}} \; \)")
-	shell("ssh {HOST} \"echo 'Error occured in the ngs-pipeline on {HOST}. Working Dir:  {WORK_DIR}' |mutt -s 'Khanlab ngs-pipeline Status' `whoami`@mail.nih.gov  {MAIL} \"")
+	shell("ssh {HOST} \"echo 'Pipeline failed on {PATIENTS}. Error occured on {HOST}. Working Dir:  {WORK_DIR}' |mutt -s 'Khanlab ngs-pipeline Status' `whoami`@mail.nih.gov  {MAIL} \"")
 onstart:
 	shell("ssh {HOST} \"echo 'ngs-pipeline started on {PATIENTS} on {HOST}. Working Dir:  {WORK_DIR}' |mutt -s 'Khanlab ngs-pipeline Status' `whoami`@mail.nih.gov {MAIL} \"")
 onsuccess: