GitHub - paulhtremblay/covid19

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 345 Commits
cloud_functions		cloud_functions
data		data
henry_covid19		henry_covid19
templates		templates
tests		tests
.gitignore		.gitignore
Readme		Readme
belg_data.py		belg_data.py
binom.ipynb		binom.ipynb
bootstrap_linear.ipynb		bootstrap_linear.ipynb
bootstrapping.ipynb		bootstrapping.ipynb
by_counties.py		by_counties.py
by_state.py		by_state.py
cases_vs_death.ipynb		cases_vs_death.ipynb
comparison_open.py		comparison_open.py
comparisons_other.ipynb		comparisons_other.ipynb
countries_rt.py		countries_rt.py
covid_poisson.ipynb		covid_poisson.ipynb
covid_spread.ipynb		covid_spread.ipynb
covid_tracker.ipynb		covid_tracker.ipynb
data_table.py		data_table.py
deaths_vs_cases_lag.ipynb		deaths_vs_cases_lag.ipynb
discussion.ipynb		discussion.ipynb
fit_exp2.ipynb		fit_exp2.ipynb
fitting_exp.ipynb		fitting_exp.ipynb
install_sel.py		install_sel.py
invalidate.py		invalidate.py
is_fl_worse_ca.ipynb		is_fl_worse_ca.ipynb
linear_regression_ex.ipynb		linear_regression_ex.ipynb
make.sh		make.sh
make_about.py		make_about.py
make_data.py		make_data.py
make_html_rt.py		make_html_rt.py
make_index_404.py		make_index_404.py
make_nav.py		make_nav.py
make_poisson_data.py		make_poisson_data.py
make_states.py		make_states.py
make_territories.py		make_territories.py
make_wa_html.py		make_wa_html.py
maks_kansas.py		maks_kansas.py
mask_data.py		mask_data.py
masks_counties.ipynb		masks_counties.ipynb
masks_kansas.csv		masks_kansas.csv
masks_states.ipynb		masks_states.ipynb
masks_states.py		masks_states.py
masks_usa.ipynb		masks_usa.ipynb
opening_change.ipynb		opening_change.ipynb
opening_change_2.ipynb		opening_change_2.ipynb
opening_change_linear.ipynb		opening_change_linear.ipynb
poisson_class.ipynb		poisson_class.ipynb
poisson_class2.ipynb		poisson_class2.ipynb
readme_l		readme_l
requirements.txt		requirements.txt
requirements_jupyter.txt		requirements_jupyter.txt
rt_during_peak.ipynb		rt_during_peak.ipynb
rural_urban_c2.py		rural_urban_c2.py
rural_urban_change.py		rural_urban_change.py
state_comparisons.py		state_comparisons.py
states_poisson.ipynb		states_poisson.ipynb
swden_vs.ipynb		swden_vs.ipynb
sweden.py		sweden.py
sweden_march.ipynb		sweden_march.ipynb
sweden_vs_wa.ipynb		sweden_vs_wa.ipynb
test		test
test_bokeh_embed.py		test_bokeh_embed.py
test_creds.py		test_creds.py
test_creds_s3.py		test_creds_s3.py
true_infections.ipynb		true_infections.ipynb
upload_data_to_bq.py		upload_data_to_bq.py
upload_html_to_bucket.py		upload_html_to_bucket.py
upload_html_to_bucket_s3.py		upload_html_to_bucket_s3.py
us_change_by_state.ipynb		us_change_by_state.ipynb
us_states_lines.ipynb		us_states_lines.ipynb
us_states_log_fit.py		us_states_log_fit.py
us_states_rates.py		us_states_rates.py
us_states_rt.py		us_states_rt.py
wa_rural.ipynb		wa_rural.ipynb
washington_state.py		washington_state.py
yakima_masks.ipynb		yakima_masks.ipynb

Repository files navigation

Code for making graphs for covid19

The site is currently served at http://www.paulhtremblay.com will change this site to henry-data.com
in the futre. If I have enough contributors, I will use a name reflects the efforts of he group.

Building the website:

the bash make.sh does the following:

1. Creates bokeh objects and inserts them into HTML documents using jina

2. copy all html files to a bucket in GCP, wher they are served. 

Setup
======
mkvirtualenv <name>
pip install -r requirements.txt
cd tests
bash test_all.sh

Back end
========

Work done generting the graphs and doing analysis on the data

Front End
=========

work done in serving the pages, such as using javascript to create links,
etc.


Dev
====

URL is http://seattle-data-dev.s3-website-us-west-2.amazonaws.com/