Fix bug in cAIC code #387 #631
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
| on: | |
| push: | |
| branches: [main, dev, fmesher2] | |
| pull_request: | |
| branches: [main, dev] | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| if: "! contains(github.event.head_commit.message, '[skip ci]')" | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: windows-latest, r: 'release'} | |
| - {os: macOS-latest, r: 'release'} | |
| # - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| # - {os: ubuntu-latest, r: 'oldrel-1'} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: ${{ matrix.config.rspm }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| if: runner.os != 'Windows' | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| run: | | |
| while read -r cmd | |
| do | |
| eval sudo $cmd | |
| done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))') | |
| - name: Install dependencies macOS | |
| if: runner.os == 'macOS' | |
| run: | | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_cran("sf") | |
| remotes::install_cran("rcmdcheck") | |
| remotes::install_cran("textshaping") | |
| remotes::install_github("pbs-assess/sdmTMBextra") | |
| install.packages("Matrix", type = "source") | |
| install.packages("TMB", type = "source") | |
| shell: Rscript {0} | |
| - name: Install dependencies Ubuntu | |
| if: runner.os == 'Linux' | |
| run: | | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_cran("knitr") | |
| remotes::install_cran("rmarkdown") | |
| remotes::install_cran("rcmdcheck") | |
| remotes::install_github("pbs-assess/sdmTMBextra") | |
| install.packages("Matrix", type = "source") | |
| install.packages("TMB", type = "source") | |
| shell: Rscript {0} | |
| - name: Install dependencies Windows | |
| if: runner.os == 'Windows' | |
| run: | | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_cran("knitr") | |
| remotes::install_cran("rmarkdown") | |
| remotes::install_cran("rcmdcheck") | |
| remotes::install_github("pbs-assess/sdmTMBextra") | |
| install.packages("Matrix", type = "source") | |
| install.packages("TMB", type = "source") | |
| shell: Rscript {0} | |
| - name: Check | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| _R_CHECK_FORCE_SUGGESTS_: false | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran", "--ignore-vignettes", "--no-build-vignettes"), build_args = c("--no-manual", "--no-build-vignettes"), error_on = "error", check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check |