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Add multi-run workflow synchronized with BIDS dataset #219

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wants to merge 33 commits into from
Closed

Add multi-run workflow synchronized with BIDS dataset #219

wants to merge 33 commits into from

Commits on May 8, 2020

  1. Start working on BIDS dataset-based multi-run converter.

    @tsalo
    tsalo committed May 8, 2020
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  2. Add some code. Not good code, but code.

    @tsalo
    tsalo committed May 8, 2020
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  3. Fix style issues.

    @tsalo
    tsalo committed May 8, 2020
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Commits on May 9, 2020

  1. Get synchronize_onsets basically working.

    @tsalo
    tsalo committed May 9, 2020
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  2. Add duration determination.

    @tsalo
    tsalo committed May 9, 2020
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Commits on May 10, 2020

  1. Minor refactor.

    @tsalo
    tsalo committed May 10, 2020
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Commits on May 12, 2020

  1. More documentation.

    @tsalo
    tsalo committed May 12, 2020
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  2. Some more fixes.

    @tsalo
    tsalo committed May 12, 2020
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  3. Fix bugs and include echo keyword. 

    Will need to drop before general use, but there is a plan in place.
Just not sure how to implement it yet.
    @tsalo
    tsalo committed May 12, 2020
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Commits on May 18, 2020

  1. More flexible trigger channel selection for debugging.

    @tsalo
    tsalo committed May 18, 2020
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Commits on Jun 18, 2020

  1. More progress on multi-run conversion.

    @tsalo
    tsalo committed Jun 18, 2020
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  2. Merge remote-tracking branch 'physiopy/master' into enh/bids-multi-run

    @tsalo
    tsalo committed Jun 18, 2020
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Commits on Jul 3, 2020

  1. Merge pull request #1 from physiopy/master 

    Update bids-multi-run.
    @tsalo
    tsalo authored Jul 3, 2020
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  2. Workflow is working now.

    @tsalo
    tsalo committed Jul 3, 2020
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  3. Fix style issues.

    @tsalo
    tsalo committed Jul 3, 2020
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  4. Reorganize and improve documentation.

    @tsalo
    tsalo committed Jul 3, 2020
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Commits on Jul 4, 2020

  1. Fix bugs.

    @tsalo
    tsalo committed Jul 4, 2020
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  2. Use physio object instead of file. 

    This way we can map channel names beforehand.
    @tsalo
    tsalo committed Jul 4, 2020
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  3. Add requirements.

    @tsalo
    tsalo committed Jul 4, 2020
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  4. Add plotting function for QC.

    @tsalo
    tsalo committed Jul 4, 2020
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  5. fix.

    @tsalo
    tsalo committed Jul 4, 2020
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Commits on Jul 8, 2020

  1. Reorganize functions and generalize update_bids_name. 

    Now that feeding an entity with a value of None will remove the entity
from the filename, we can drop `drop_bids_multicontrast_keys`.
    @tsalo
    tsalo committed Jul 8, 2020
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  2. Fix style issue.

    @tsalo
    tsalo committed Jul 8, 2020
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Commits on Jul 19, 2020

  1. Update.

    @tsalo
    tsalo committed Jul 19, 2020
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  2. Merge branch 'master' into enh/bids-multi-run

    @tsalo
    tsalo committed Jul 19, 2020
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  3. Get trigger update and resampling working.

    @tsalo
    tsalo committed Jul 19, 2020
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  4. Update requirements.

    @tsalo
    tsalo committed Jul 19, 2020
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Commits on Oct 8, 2020

  1. Merge branch 'master' into enh/bids-multi-run

    @tsalo
    tsalo committed Oct 8, 2020
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Commits on Oct 10, 2020

  1. Run black on files.

    @tsalo
    tsalo committed Oct 10, 2020
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  2. Move test of function I'd renamed.

    @tsalo
    tsalo committed Oct 10, 2020
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  3. Fix style issues. 

    Docstring rules are way too aggressive.

Also, E203 should be ignored. It's wrong.
    @tsalo
    tsalo committed Oct 10, 2020
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  4. Update conversion.py

    @tsalo
    tsalo committed Oct 10, 2020
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Commits on Jan 2, 2021

  1. Merge branch 'master' into enh/bids-multi-run

    @tsalo
    tsalo committed Jan 2, 2021
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