Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Generate report with phys2bids outputs #407

Draft
wants to merge 2 commits into
base: master
Choose a base branch
from

Conversation

eurunuela
Copy link
Collaborator

@eurunuela eurunuela commented Jun 24, 2021

Closes #131

This is a follow-up of #243 as the branch on that PR got deleted.

Proposed Changes

  • Adds the functionality to generate a report with phys2bids outputs when requested through the CLI interface or the Python function in phys2bids.py.

Change Type

  • bugfix (+0.0.1)
  • minor (+0.1.0)
  • major (+1.0.0)
  • refactoring (no version update)
  • test (no version update)
  • infrastructure (no version update)
  • documentation (no version update)
  • other

Checklist before review

  • I added everything I wanted to add to this PR.
  • [Code or tests only] I wrote/updated the necessary docstrings.
  • [Code or tests only] I ran and passed tests locally.
  • [Documentation only] I built the docs locally.
  • My contribution is harmonious with the rest of the code: I'm not introducing repetitions.
  • My code respects the adopted style, especially linting conventions.
  • The title of this PR is explanatory on its own, enough to be understood as part of a changelog.
  • I added or indicated the right labels.
  • I added information regarding the timeline of completion for this PR.
  • Please, comment on my PR while it's a draft and give me feedback on the development!

@eurunuela eurunuela added Urgent If you don't know where to start, start here! Minormod This PR generally closes an `Enhancement` issue. It increments the minor version (0.+1.0) labels Jun 24, 2021
@codecov
Copy link

codecov bot commented Jun 24, 2021

Codecov Report

Merging #407 (d449661) into master (7369827) will increase coverage by 0.34%.
The diff coverage is 98.78%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #407      +/-   ##
==========================================
+ Coverage   94.81%   95.15%   +0.34%     
==========================================
  Files           8        9       +1     
  Lines         868      950      +82     
==========================================
+ Hits          823      904      +81     
- Misses         45       46       +1     
Impacted Files Coverage Δ
phys2bids/reporting/html_report.py 98.71% <98.71%> (ø)
phys2bids/cli/run.py 96.66% <100.00%> (+0.11%) ⬆️
phys2bids/phys2bids.py 88.33% <100.00%> (+0.19%) ⬆️

@eurunuela
Copy link
Collaborator Author

As of right now, the plots don't get loaded. I checked and tedana is not restricting the Bokeh version and we are doing the same. So, I'd say the issue is not related to the version of Bokeh.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Minormod This PR generally closes an `Enhancement` issue. It increments the minor version (0.+1.0) Urgent If you don't know where to start, start here!
Projects
Status: Need help!
Status: BrainHack Vanderbilt 2024
Development

Successfully merging this pull request may close these issues.

Generate a report with all the outputs
2 participants