Added test for subsample output

pjotrp · Dec 31, 2017 · 872702f · 872702f
1 parent d212efa
commit 872702f
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Showing 2 changed files with 6 additions and 1 deletion.
diff --git a/sambamba/bio2/pileup.d b/sambamba/bio2/pileup.d
@@ -142,7 +142,7 @@ struct RingBuffer(T) {
   }
 
   ulong length() @property const {
-    writeln(_tail.get(),":",_head.get(),"= len ",_tail.get()-_head.get());
+    // writeln(_tail.get(),":",_head.get(),"= len ",_tail.get()-_head.get());
     return _tail.get() - _head.get();
   }
 

diff --git a/test_suite.sh b/test_suite.sh
@@ -1,5 +1,10 @@
 #!/usr/bin/env bash
 
+testSubSample() {
+    ./bin/sambamba subsample ex1_header.sorted.bam -otest3.bam &> test.out
+    assertEquals "5c2823e29b24a425bee5dba62107a2ce" $(md5sum test3.bam |cut -c 1-32)
+}
+
 testSortByName() {
     # use very tiny buffer of 200K so that multithreading is used
     # ./bin/sambamba sort -t2 -n BioD/test/data/ex1_header.bam -o ex1_header.nsorted.bam -m 200K