fixed another coercion to matrix

plger · Sep 19, 2024 · ba4e32e · ba4e32e
1 parent 39eafb1
commit ba4e32e
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: scDblFinder
 Type: Package
 Title: scDblFinder
-Version: 1.19.3
+Version: 1.19.4
 Authors@R: c(
     person("Pierre-Luc", "Germain", email="pierre-luc.germain@hest.ethz.ch", role=c("cre","aut"), comment=c(ORCID="0000-0003-3418-4218")),
     person("Aaron", "Lun", email="infinite.monkeys.with.keyboards@gmail.com", role="ctb"))

diff --git a/R/computeDoubletDensity.R b/R/computeDoubletDensity.R
@@ -147,7 +147,7 @@ NULL
         stop("Duplicate cells detected. These are probably low-quality cells ",
              "that have very few reads, and should be filtered out.")
 
-    sim.n <- queryNeighbors(sim.pcs, query=pcs, 
+    sim.n <- queryNeighbors(as.matrix(sim.pcs), query=as.matrix(pcs), 
         threshold=self.dist * 1.00000001, # bump it up to avoid issues with numerical precision during tests.
         BNPARAM=BNPARAM, BPPARAM=BPPARAM, 
         get.distance=FALSE, get.index=FALSE)