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1. lammps_le lammps_le Public

   Loop extrusion module with LAMMPS

   C++ 5

2. DPDchrom DPDchrom Public

   Reconstruction of 3D conformation of chromatin fiber using single cell Hi-C data

   Fortran 3

3. dstMatrixFromLmpFile dstMatrixFromLmpFile Public

   Short script to create distance matrix in dat fromat from lmp file (LAMMPS).

   Python

4. DPD_withRemovingBonds DPD_withRemovingBonds Public

   Fortran

5. logbin logbin Public

   Logarithmic binning python script

   Python

6. lammpstrj_motion_correction lammpstrj_motion_correction Public

   Subtract the translational and rotational movement of the polymer chain to study subdiffusion. It works quite bad for systems with less than 50 beads.

   Python