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Run pipeline

Run pipeline #37

Workflow file for this run

name: Run pipeline
on:
workflow_dispatch:
repository_dispatch:
types: [run_pipeline]
schedule:
- cron: '30 2 * * 0,3'
jobs:
update-file:
runs-on: ubuntu-20.04
steps:
- name: checkout
uses: actions/checkout@v3
with:
fetch-depth: 0
ref: master
- name: Install Python
uses: actions/setup-python@v1
with:
python-version: 3.9
- name: Install dependencies
run: |
sudo apt-get install subversion -y
python -m pip install --upgrade pip
pip install poetry
poetry config virtualenvs.create false
poetry install --no-dev
- name: Update file
run: |
bash run_analysis.sh
- name: Commit changes
uses: stefanzweifel/git-auto-commit-action@v4
with:
commit_message: updated to last revision
file_pattern: "*.tsv"