Skip to content

fixes #104

fixes #104 #134

Workflow file for this run

name: Run tests
on: [push, pull_request]
jobs:
test:
runs-on: ubuntu-20.04
steps:
- name: checkout
uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Install Python
uses: actions/setup-python@v1
with:
python-version: 3.9
- name: Install python dependencies
run: |
sudo apt-get install subversion -y
python -m pip install --upgrade pip
pip install poetry
poetry config virtualenvs.create false
poetry install --no-dev
- name: Install and set up transvar
run: |
. transvar_env_vars.sh
sudo apt install -y samtools tabix
bash set_up_transvar.sh
- name: Run tests
# -W because of transvar
run: |
. transvar_env_vars.sh
python -W ignore:ResourceWarning -m unittest -v