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@kimrutherford @github-actions
kimrutherford authored and github-actions[bot] committed Jul 28, 2024
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Showing 10 changed files with 11,090 additions and 11,081 deletions.
10,323 changes: 5,161 additions & 5,162 deletions data/alleles.tsv
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50 changes: 32 additions & 18 deletions data/chromosome1.contig
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Expand Up @@ -3086,13 +3086,14 @@ FT /systematic_id="SPNCRNA.624"
FT /product="non-coding RNA, possible alternative UTR"
FT /obsolete_name="SPAC24B11.14-antisense-1"
FT CDS join(230545..230681,230743..230799,230830..231136)
FT /colour=6
FT /note="neither intron was detected in transcriptome data,
FT unlikely to be coding"
FT /product="dubious"
FT /colour=9
FT /note="neither intron was detected in transcriptome data"
FT /product="Schizosaccharomyces pombe specific protein"
FT /synonym="SPAC806.10"
FT /systematic_id="SPAC24B11.14"
FT /db_xref="SPD:06/06E02"
FT /controlled_curation="term=species distribution,
FT Schizosaccharomyces pombe specific; date=20240724"
FT lncRNA complement(231166..232569)
FT /db_xref="PMID:29914874"
FT /systematic_id="SPNCRNA.2097"
Expand Down Expand Up @@ -21474,8 +21475,8 @@ FT /feature_source="evidence=ECO:0000309; source=SO:0001238;
FT condition=FYECO:0000126; during=GO:0072690; score=2.15579;
FT db_xref=PMID:30566651"
FT CDS join(1376587..1376947,1377032..1377072)
FT /colour=12
FT /product="Schizosaccharomyces specific protein Mug15"
FT /colour=10
FT /product="Roadblock/LC7 domain superfamily protein Mug15"
FT /primary_name="mug15"
FT /systematic_id="SPAC57A10.06"
FT /db_xref="SPD:04/04E07"
Expand All @@ -21486,8 +21487,8 @@ FT /controlled_curation="term=gene expression, RNA level;
FT annotation_extension=during(GO:0051321);
FT qualifier=increased; evidence=ECO:0000006;
FT db_xref=PMID:16303567; date=20100103"
FT /controlled_curation="term=species distribution,
FT Schizosaccharomyces specific; date=20140820"
FT /controlled_curation="term=species distribution, conserved
FT in eukaryotes; date=20140820"
FT lncRNA complement(1376615..1376978)
FT /db_xref="PMID:29914874"
FT /systematic_id="SPNCRNA.2599"
Expand Down Expand Up @@ -47362,7 +47363,8 @@ FT condition=FYECO:0000126; during=GO:0072690; score=4.4144;
FT db_xref=PMID:30566651"
FT CDS 2913403..2913705
FT /colour=8
FT /product="Schizosaccharomyces pombe specific protein"
FT /product="Schizosaccharomyces pombe specific protein,
FT implicated in mating"
FT /systematic_id="SPAC513.04"
FT /db_xref="SPD:01/01D10"
FT /controlled_curation="term=warning, previously annotated
Expand Down Expand Up @@ -51825,8 +51827,8 @@ FT /product="non-coding RNA"
FT /obsolete_name="fmc1-antisense-1"
FT CDS join(3202780..3202833,3202877..3203137)
FT /colour=7
FT /product="mitochondrial complex assembly factor, LYR
FT family Fmc1 (predicted)"
FT /product="mitochondrial proton-transporting ATP synthase
FT complex assembly factor, LYR family, Fmc1"
FT /systematic_id="SPAC1486.11"
FT /controlled_curation="term=orthologous to S. cerevisiae
FT YIL098C; date=20090721"
Expand Down Expand Up @@ -55918,9 +55920,6 @@ FT /product="translation elongation factor EF2
FT methyltransferase Efm3 (predicted)"
FT /systematic_id="SPAC3A11.03"
FT /db_xref="SPD:15/15F03"
FT /controlled_curation="term=sequence feature, N-terminal
FT signal sequence; qualifier=predicted; cv=sequence_feature;
FT date=19700101"
FT /controlled_curation="term=orthologous to S. cerevisiae
FT YJR129C; date=19700101"
FT /controlled_curation="term=species distribution, conserved
Expand Down Expand Up @@ -62260,10 +62259,13 @@ FT /systematic_id="SPNCRNA.3730"
FT /product="non-coding RNA"
FT CDS 3881345..3881662
FT /systematic_id="SPAC1071.13"
FT /product="dubious"
FT /product="Schizosaccharomyces pombe specific protein,
FT predicted KOW-SH3 superfamily member"
FT /controlled_curation="term=warning, new gene;
FT db_xref=PMID:21511999; date=20110311"
FT /colour=6
FT /controlled_curation="term=species distribution,
FT Schizosaccharomyces pombe specific; date=20240724"
FT /colour=8
FT 3'UTR 3881663..3881812
FT /systematic_id="SPAC1071.13"
FT /db_xref="PMID:21511999"
Expand Down Expand Up @@ -68566,8 +68568,20 @@ FT /systematic_id="SPAC2C4.10c"
FT /db_xref="SPD:07/07A08"
FT /controlled_curation="term=name description, Component of
FT SIP Complex; db_xref=PMID:22119525; date=20121121"
FT /controlled_curation="term=species distribution,
FT Schizosaccharomyces specific; date=20140820"
FT /controlled_curation="term=species distribution, conserved
FT in eukaryotes; date=20240725"
FT /controlled_curation="term=species distribution, conserved
FT in metazoa; date=20240725"
FT /controlled_curation="term=species distribution, conserved
FT in eukaryotes only; date=20240725"
FT /controlled_curation="term=species distribution, conserved
FT in vertebrates; date=20240725"
FT /controlled_curation="term=species distribution, conserved
FT in fungi; date=20240725"
FT /controlled_curation="term=human SIKE1 and FGFR1OP2
FT ortholog; db_xref=PB_REF:0000008; date=20240725"
FT /controlled_curation="term=species distribution, no
FT apparent S. cerevisiae ortholog; date=20240725"
FT /primary_name="csc4"
FT 5'UTR complement(4277775..4277951)
FT /systematic_id="SPAC2C4.10c"
Expand Down
31 changes: 12 additions & 19 deletions data/chromosome2.contig
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Original file line number Diff line number Diff line change
Expand Up @@ -23438,8 +23438,7 @@ FT /colour=2
FT /obsolete_name="pi009"
FT /obsolete_name="SPACTOKYO_453.27"
FT /primary_name="his3"
FT /product="histidinol-phosphate aminotransferase imidazole
FT acetol phosphate transaminase His3"
FT /product="histidinol-phosphate transaminase His3"
FT /db_xref="SPD:50/50G02"
FT /systematic_id="SPBC11B10.02c"
FT /controlled_curation="term=orthologous to S. cerevisiae
Expand Down Expand Up @@ -54259,15 +54258,21 @@ FT /db_xref="PMID:29914874"
FT /systematic_id="SPNCRNA.6080"
FT /product="non-coding RNA"
FT CDS 3335110..3336216
FT /colour=12
FT /colour=10
FT /primary_name="rhs1"
FT /product="Schizosaccharomyces specific protein"
FT /product="fungal protein, conserved in ascomycetes"
FT /db_xref="SPD:17/17D10"
FT /systematic_id="SPBC17D1.05"
FT /controlled_curation="term=species distribution,
FT Schizosaccharomyces specific; date=20140820"
FT /controlled_curation="term=Regulator of Heat Sensitivity;
FT date=20230414"
FT /controlled_curation="term=species distribution, conserved
FT in fungi; date=20240722"
FT /controlled_curation="term=species distribution, conserved
FT in fungi only; date=20240722"
FT /controlled_curation="term=species distribution, no
FT apparent S. cerevisiae ortholog; date=20240722"
FT 3'UTR 3336217..3337149
FT /systematic_id="SPBC17D1.05"
FT /db_xref="PMID:21511999"
Expand Down Expand Up @@ -62030,26 +62035,14 @@ FT /systematic_id="SPNCRNA.6295"
FT /product="non-coding RNA"
FT CDS complement(3819384..3821909)
FT /colour=10
FT /product="chromatin binding protein ortholog"
FT /product="cell surface glycoprotein"
FT /db_xref="SPD:29/29C03"
FT /systematic_id="SPBC21C3.14c"
FT /controlled_curation="term=sequence feature, N-terminal
FT signal sequence; qualifier=predicted; cv=sequence_feature;
FT date=19700101"
FT /controlled_curation="term=species distribution, conserved
FT in metazoa; db_xref=PANTHER:PTHR16112; date=20170521"
FT /controlled_curation="term=human MBD5 and MBD6 ortholog;
FT db_xref=PANTHER:PTHR16112; date=20170521"
FT /controlled_curation="term=species distribution, conserved
FT in vertebrates; db_xref=PANTHER:PTHR16112; date=20170521"
FT /controlled_curation="term=species distribution, conserved
FT in fungi; db_xref=PANTHER:PTHR16112; date=20170521"
FT /controlled_curation="term=species distribution, conserved
FT in eukaryotes only; db_xref=PANTHER:PTHR16112;
FT date=20170521"
FT /controlled_curation="term=species distribution, no
FT apparent S. cerevisiae ortholog;
FT db_xref=PANTHER:PTHR16112; date=20170521"
FT /controlled_curation="term=species distribution,
FT Schizosaccharomyces specific; date=20240724"
FT lncRNA 3820591..3821761
FT /db_xref="PMID:29914874"
FT /systematic_id="SPNCRNA.6296"
Expand Down
32 changes: 18 additions & 14 deletions data/chromosome3.contig
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Original file line number Diff line number Diff line change
Expand Up @@ -15092,12 +15092,14 @@ FT 3'UTR complement(1014272..1014647)
FT /systematic_id="SPCC895.08c"
FT /db_xref="PMID:21511999"
FT CDS complement(1014648..1016120)
FT /colour=12
FT /product="Schizosaccharomyces specific protein"
FT /colour=10
FT /product="arrestin family protein"
FT /db_xref="SPD:23/23G05"
FT /systematic_id="SPCC895.08c"
FT /controlled_curation="term=species distribution,
FT Schizosaccharomyces specific; date=20140820"
FT /controlled_curation="term=species distribution, conserved
FT in eukaryotes; date=20240726"
FT /controlled_curation="term=species distribution, orthologs
FT cannot be distinguished; date=20240726"
FT lncRNA 1015043..1015951
FT /db_xref="PMID:29914874"
FT /systematic_id="SPNCRNA.7152"
Expand Down Expand Up @@ -21214,13 +21216,14 @@ FT /feature_source="evidence=ECO:0000309; source=SO:0001238;
FT condition=FYECO:0000126; during=GO:0072690;
FT score=17.880900; db_xref=PMID:30566651"
FT CDS 1449606..1451015
FT /colour=12
FT /product="Schizosaccharomyces specific multicopy membrane
FT protein family 1"
FT /colour=10
FT /product="7 transmembrane receptor family protein"
FT /db_xref="SPD:21/21G07"
FT /systematic_id="SPCC61.05"
FT /controlled_curation="term=species distribution,
FT Schizosaccharomyces specific; date=20140820"
FT /controlled_curation="term=species distribution, conserved
FT in eukaryotes; date=20240726"
FT /controlled_curation="term=species distribution, orthologs
FT cannot be distinguished; date=20240726"
FT 3'UTR 1451016..1451611
FT /systematic_id="SPCC61.05"
FT /db_xref="PMID:21511999"
Expand Down Expand Up @@ -35497,13 +35500,14 @@ FT 3'UTR complement(2420265..2420663)
FT /systematic_id="SPCC569.06"
FT /db_xref="PMID:21511999"
FT CDS complement(2420664..2422100)
FT /colour=12
FT /product="Schizosaccharomyces specific multicopy membrane
FT protein family 1"
FT /colour=10
FT /db_xref="SPD:23/23B10"
FT /systematic_id="SPCC569.06"
FT /controlled_curation="term=species distribution,
FT Schizosaccharomyces specific; date=20140820"
FT /product="7 transmembrane receptor family protein"
FT /controlled_curation="term=species distribution, conserved
FT in eukaryotes; date=20240726"
FT /controlled_curation="term=species distribution, orthologs
FT cannot be distinguished; date=20240726"
FT lncRNA 2421871..2422100
FT /db_xref="PMID:29914874"
FT /systematic_id="SPNCRNA.7762"
Expand Down
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