Jasmine SV merging tool (#151)

* conda build of jasmine

images.toml

@@ -18,6 +18,7 @@ gatk_gcnv = '4.5.0.0'
 gatk-sv_issue_661 = 'n_a'
 hap-py = '0.3.15'
 haplocheckcli = '64293b3481d52025a01a293f6cc891546c30660e'
+jasmine = '1.1.5'
 mitoreport = '1.1.0'
 multipy = '0.16'
 multiqc = '1.14'

images/jasmine/Dockerfile

@@ -0,0 +1,14 @@
+FROM debian:buster-slim
+
+ENV MAMBA_ROOT_PREFIX /root/micromamba
+ENV PATH $MAMBA_ROOT_PREFIX/bin:$PATH
+ARG VERSION=${VERSION:-1.1.5}
+
+RUN apt-get update && apt-get install -y git wget bash bzip2 zip curl && \
+    rm -r /var/lib/apt/lists/* && \
+    rm -r /var/cache/apt/* && \
+    wget -qO- https://api.anaconda.org/download/conda-forge/micromamba/0.8.2/linux-64/micromamba-0.8.2-he9b6cbd_0.tar.bz2 | tar -xvj -C /usr/local bin/micromamba && \
+    mkdir ${MAMBA_ROOT_PREFIX} && \
+    micromamba install -y --prefix ${MAMBA_ROOT_PREFIX} -c bioconda -c conda-forge \
+    jasminesv=${VERSION} && \
+    rm -r /root/micromamba/pkgs \