import libpysal instead of pysal for doctests and add CHANGELOG.txt

.gitignore

@@ -3,4 +3,24 @@
 .rope*
 .idea/
 notebooks/.ipynb_checkpoints/
-.DS_Store
+.DS_Store
+.ipynb_checkpoints/
+*.bak
+.eggs/
+*.egg-info/
+
+# Packages
+*.egg
+*.egg-info
+dist
+build
+eggs
+parts
+bin
+var
+sdist
+develop-eggs
+.installed.cfg
+lib
+lib64
+__pycache__

CHANGELOG.txt

@@ -0,0 +1,28 @@
+v<1.1.0>, 2018-05-17
+
+This release is the first tagged release of pointpats on Github.
+Starting from this release, pointpats supports python 3.5 and 3.6 only.
+
+GitHub stats for 2017/04/22 - 2018/05/17
+
+These lists are automatically generated, and may be incomplete or contain duplicates.
+
+
+We closed a total of 9 issues, 4 pull requests and 5 regular issues;
+this is the full list (generated with the script 
+:file:`tools/github_stats.py`):
+
+Pull Requests (4):
+
+* :ghpull:`12`: b'chore: libpysal is 3 only now so removing travis tests on python 2'
+* :ghpull:`11`: b'try removing conversion and see if this passes'
+* :ghpull:`10`: b'updating license'
+* :ghpull:`9`: b'Update the Readme file, change the relative URL links to absolute URLs'
+
+Issues (5):
+
+* :ghissue:`12`: b'chore: libpysal is 3 only now so removing travis tests on python 2'
+* :ghissue:`11`: b'try removing conversion and see if this passes'
+* :ghissue:`10`: b'updating license'
+* :ghissue:`9`: b'Update the Readme file, change the relative URL links to absolute URLs'
+* :ghissue:`8`: b'Relative links to notebooks on pypi landing page are broken'

pointpats/distance_statistics.py

@@ -669,11 +669,11 @@ class Genv(Envelopes):
 
     Examples
     --------
-    >>> import pysal as ps
-    >>> from points.distance_statistics import Genv
-    >>> from pysal.contrib import shapely_ext
-    >>> from points.process import PoissonPointProcess
-    >>> from points.window import Window
+    >>> import libpysal as ps
+    >>> from pointpats.distance_statistics import Genv
+    >>> from libpysal.cg import shapely_ext
+    >>> from pointpats.process import PoissonPointProcess
+    >>> from pointpats.window import Window
     >>> va = ps.open(ps.examples.get_path("vautm17n.shp"))
     >>> polys = [shp for shp in va]
     >>> state = shapely_ext.cascaded_union(polys)
@@ -748,11 +748,11 @@ class Fenv(Envelopes):
 
     Examples
     --------
-    >>> import pysal as ps
-    >>> from points.distance_statistics import Fenv
-    >>> from pysal.contrib import shapely_ext
-    >>> from points.process import PoissonPointProcess
-    >>> from points.window import Window
+    >>> import libpysal as ps
+    >>> from pointpats.distance_statistics import Fenv
+    >>> from libpysal.cg import shapely_ext
+    >>> from pointpats.process import PoissonPointProcess
+    >>> from pointpats.window import Window
     >>> va = ps.open(ps.examples.get_path("vautm17n.shp"))
     >>> polys = [shp for shp in va]
     >>> state = shapely_ext.cascaded_union(polys)
@@ -828,11 +828,11 @@ class Jenv(Envelopes):
 
     Examples
     --------
-    >>> import pysal as ps
-    >>> from points.distance_statistics import Jenv
-    >>> from pysal.contrib import shapely_ext
-    >>> from points.process import PoissonPointProcess
-    >>> from points.window import Window
+    >>> import libpysal as ps
+    >>> from pointpats.distance_statistics import Jenv
+    >>> from libpysal.cg import shapely_ext
+    >>> from pointpats.process import PoissonPointProcess
+    >>> from pointpats.window import Window
     >>> va = ps.open(ps.examples.get_path("vautm17n.shp"))
     >>> polys = [shp for shp in va]
     >>> state = shapely_ext.cascaded_union(polys)
@@ -905,11 +905,11 @@ class Kenv(Envelopes):
 
     Examples
     --------
-    >>> import pysal as ps
-    >>> from points.distance_statistics import Kenv
-    >>> from pysal.contrib import shapely_ext
-    >>> from points.process import PoissonPointProcess
-    >>> from points.window import Window
+    >>> import libpysal as ps
+    >>> from pointpats.distance_statistics import Kenv
+    >>> from libpysal.cg import shapely_ext
+    >>> from pointpats.process import PoissonPointProcess
+    >>> from pointpats.window import Window
     >>> va = ps.open(ps.examples.get_path("vautm17n.shp"))
     >>> polys = [shp for shp in va]
     >>> state = shapely_ext.cascaded_union(polys)
@@ -980,11 +980,11 @@ class Lenv(Envelopes):
 
     Examples
     --------
-    >>> import pysal as ps
-    >>> from points.distance_statistics import Lenv
-    >>> from pysal.contrib import shapely_ext
-    >>> from points.process import PoissonPointProcess
-    >>> from points.window import Window
+    >>> import libpysal as ps
+    >>> from pointpats.distance_statistics import Lenv
+    >>> from libpysal.cg import shapely_ext
+    >>> from pointpats.process import PoissonPointProcess
+    >>> from pointpats.window import Window
     >>> va = ps.open(ps.examples.get_path("vautm17n.shp"))
     >>> polys = [shp for shp in va]
     >>> state = shapely_ext.cascaded_union(polys)

pointpats/pointpattern.py

@@ -45,7 +45,7 @@ class PointPattern(object):
     Examples
     --------
 
-    >>> from points.pointpattern import PointPattern
+    >>> from pointpats.pointpattern import PointPattern
     >>> points = [[66.22, 32.54], [22.52, 22.39], [31.01, 81.21],
     ...           [9.47, 31.02], [30.78, 60.10], [75.21, 58.93],
     ...           [79.26,  7.68], [8.23, 39.93], [98.73, 77.17],
@@ -60,9 +60,9 @@ class PointPattern(object):
     >>> pp.lambda_hull
     0.0022667153468973137
     >>> pp.hull_area
-    5294.0039500000003
+    5294.00395
     >>> pp.mbb_area
-    7638.2000000000007
+    7638.200000000001
 
     """
     def __init__(self, points, window=None, names=None, coord_names=None):

pointpats/process.py

@@ -190,10 +190,10 @@ class PoissonPointProcess(PointProcess):
 
     Examples
     --------
-    >>> import pysal as ps
+    >>> import libpysal as ps
     >>> import numpy as np
-    >>> from points.window import Window, poly_from_bbox
-    >>> from pysal.contrib import shapely_ext
+    >>> from pointpats.window import Window, poly_from_bbox
+    >>> from libpysal.cg import shapely_ext
 
     Open the virginia polygon shapefile
     >>> va = ps.open(ps.examples.get_path("virginia.shp"))
@@ -339,10 +339,10 @@ class PoissonClusterPointProcess(PointProcess):
 
     Examples
     --------
-    >>> import pysal as ps
+    >>> import libpysal as ps
     >>> import numpy as np
-    >>> from points.window import Window, poly_from_bbox
-    >>> from pysal.contrib import shapely_ext
+    >>> from pointpats.window import Window, poly_from_bbox
+    >>> from libpysal.cg import shapely_ext
 
     Open the virginia polygon shapefile
     >>> va = ps.open(ps.examples.get_path("virginia.shp"))
@@ -433,8 +433,8 @@ def realize(self, n):
         l, b, r, t = self.window.bbox
         d = self.radius
         # get parent points
-        pxs = np.random.uniform(l, r, (n/self.children, 1))
-        pys = np.random.uniform(b, t, (n/self.children, 1))
+        pxs = np.random.uniform(l, r, (int(n/self.children), 1))
+        pys = np.random.uniform(b, t, (int(n/self.children), 1))
         cents = np.hstack((pxs, pys))
         # generate children points
         pnts = [runif_in_circle(self.children, d, center) for center in cents]

setup.py

@@ -3,6 +3,9 @@
 
 from distutils.command.build_py import build_py
 
+with open('README.rst') as file:
+    long_description = file.read()
+
 pth = os.path.dirname(os.path.abspath(__file__))+ '/requirements.txt'
 
 REQUIREMENTS = [i.strip() for i in open(pth).readlines()]
@@ -15,6 +18,7 @@
 setup(name='pointpats',
       version=version,
       description='Methods and Functions for planar point pattern analysis',
+      long_description = long_description,
       url='https://github.com/pysal/pointpats',
       maintainer='Hu Shao',
       maintainer_email='shaohutiger@gmail.com',