migrate to pyproject

.github/release.yml

@@ -0,0 +1,16 @@
+changelog:
+  exclude:
+    labels:
+      - ignore-for-release
+    authors:
+      - dependabot
+  categories:
+    - title: Bug Fixes
+      labels:
+        - bug
+    - title: Enhancements
+      labels:
+        - enhancement
+    - title: Other Changes
+      labels:
+        - "*"

.github/workflows/build_docs.yml

@@ -45,7 +45,9 @@
            micromamba-version: 'latest'
 
        - name: make docs
-         run: cd docs; make html
+         run: |
+           pip install -e . --no-deps --force-reinstall
+           cd docs; make html
 
        - name: commit docs
          run: |

.github/workflows/release_and_publish.yml

@@ -1,16 +1,15 @@
 # Release package on GitHub and publish to PyPI
 # IMPORTANT -- 1 MANUAL STEP
 #   * FOLLOWING TAGGED RELEASE
-#       - update CHANGELOG.md
+#       - update CHANGELOG.md 
 #--------------------------------------------------
-
-name: Build, Release, and publish
+name: Release & Publish
 
 on:
   push:
     # Sequence of patterns matched against refs/tags
     tags:
-      - 'v*' # Push events to matching v*, i.e. v1.0, v20.15.10
+      - "v*" # Push events to matching v*, i.e. v1.0, v20.15.10
   workflow_dispatch:
     inputs:
       version:
@@ -24,21 +23,32 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout repo
-        uses: actions/checkout@v3
-
+        uses: actions/checkout@v4
+      
       - name: Set up python
         uses: actions/setup-python@v4
         with:
           python-version: "3.x"
-
-      - name: Install dependencies
+      
+      - name: Install Dependencies
         run: |
           python -m pip install --upgrade pip
-          pip install setuptools wheel twine jupyter urllib3 pandas pyyaml
-          python setup.py sdist bdist_wheel
-
+          python -m pip install --upgrade build twine
+          python -m build
+          twine check --strict dist/*
+
+      - name: Create Release Notes
+        uses: actions/github-script@v6
+        with:
+          github-token: ${{secrets.GITHUB_TOKEN}}
+          script: |
+            await github.request(`POST /repos/${{ github.repository }}/releases`, {
+              tag_name: "${{ github.ref }}",
+              generate_release_notes: true
+            });
+
       - name: Publish distribution 📦 to PyPI
         uses: pypa/gh-action-pypi-publish@release/v1
         with:
           user: __token__
-          password: ${{ secrets.PYPI_PASSWORD }}
+          password: ${{ secrets.PYPI_PASSWORD }}

codecov.yml

@@ -0,0 +1,22 @@
+codecov:
+  notify:
+    after_n_builds: 7
+coverage:
+  range: 50..95
+  round: nearest
+  precision: 1
+  status:
+    project:
+      default:
+        threshold: 5%
+    patch:
+      default:
+        threshold: 20%
+        target: 60%
+  ignore:
+    - "tests/*"
+comment:
+  layout: "reach, diff, files"
+  behavior: once
+  after_n_builds: 7
+  require_changes: true

environment.yml

@@ -0,0 +1,10 @@
+name: pointpats
+channels:
+  - conda-forge
+  - defaults
+dependencies:
+  - pandas
+  - libpysal
+  - matplotlib
+  - pandas
+  - scipy>=0.11

pyproject.toml

@@ -0,0 +1,104 @@
+[build-system]
+requires = ["setuptools>=61.0", "setuptools_scm[toml]>=6.2"]
+build-backend = "setuptools.build_meta"
+
+[tool.setuptools_scm]
+
+[project]
+name = "pointpats"
+dynamic = ["version"]
+authors = [
+    { name = "Serge Rey", email = "sjsrey@gmail.com" },
+    { name = "Hu Shao", email = "shaohutiger@gmail.com" },
+]
+maintainers = [{ name = "pysal contributors" }]
+license = { text = "BSD 3-Clause" }
+description = "Methods and Functions for planar point pattern analysis"
+keywords = [
+    "spatial statistics, point patterns"
+]
+readme = { text = """\
+"Methods and Functions for planar point pattern analysis"
+
+""", content-type = "text/x-rst" }
+classifiers = [
+    "Programming Language :: Python :: 3",
+    "License :: OSI Approved :: BSD License",
+    "Operating System :: OS Independent",
+    "Intended Audience :: Science/Research",
+    "Topic :: Scientific/Engineering :: GIS",
+]
+requires-python = ">=3.7"
+dependencies = [
+    "numpy",
+    "pandas",
+    "scipy >=1.8",
+    "libpysal >=4",
+    "matplotlib"
+]
+
+[project.urls]
+Home = "https://github.com/pysal/pointpats/"
+Repository = "https://github.com/pysal/pointpats"
+
+[project.optional-dependencies]
+dev = ["pre-commit"]
+docs = [
+    "nbsphinx",
+    "numpydoc",
+    "pandoc",
+    "sphinx",
+    "sphinxcontrib-bibtex",
+    "sphinx_bootstrap_theme",
+    "mkdocs-jupyter",
+    "myst-parser"
+]
+tests = [
+    "geopandas",
+    "codecov",
+    "coverage",
+    "pytest",
+    "pytest-mpl",
+    "pytest-cov",
+    "watermark",
+]
+
+[tool.setuptools.packages.find]
+include = ["pointpats", "pointpats.*"]
+
+[tool.black]
+line-length = 88
+
+[tool.ruff]
+line-length = 88
+select = ["E", "F", "W", "I", "UP", "N", "B", "A", "C4", "SIM", "ARG"]
+target-version = "py39"
+ignore = [
+    "B006",
+    "B008",
+    "B009",
+    "B010",
+    "C408",
+    "E731",
+    "F401",
+    "F403",
+    "N803",
+    "N806",
+    "N999",
+    "UP007"
+]
+exclude = ["pointpats/tests/*", "docs/*"]
+
+[tool.coverage.run]
+source = ["./pointpats"]
+
+[tool.coverage.report]
+exclude_lines = [
+    "if self.debug:",
+    "pragma: no cover",
+    "raise NotImplementedError",
+    "except ModuleNotFoundError:",
+    "except ImportError",
+]
+ignore_errors = true
+omit = ["pointpats/tests/*", "docs/conf.py"]