don't leave summary file behind (#47)

* donot leave summary file behind * server.crt -> ci_rootca.crt
qiita-spots · Aug 4, 2023 · 508d124 · 508d124
1 parent 33393e0
commit 508d124
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Showing 2 changed files with 5 additions and 3 deletions.
diff --git a/.github/workflows/qiita-plugin-ci.yml b/.github/workflows/qiita-plugin-ci.yml
@@ -80,7 +80,7 @@ jobs:
           conda create -q --yes -n qtp-sequencing python=3.9 pip pigz quast fqtools
           conda activate qtp-sequencing
 
-          export QIITA_SERVER_CERT=`pwd`/qiita-dev/qiita_core/support_files/server.crt
+          export QIITA_SERVER_CERT=`pwd`/qiita-dev/qiita_core/support_files/ci_rootca.crt
           export QIITA_CONFIG_FP=`pwd`/qiita-dev/qiita_core/support_files/config_test_local.cfg
           pip install -U pip
           pip install .
@@ -90,7 +90,7 @@ jobs:
         shell: bash -l {0}
         run: |
           conda activate qiita
-          export QIITA_SERVER_CERT=`pwd`/qiita-dev/qiita_core/support_files/server.crt
+          export QIITA_SERVER_CERT=`pwd`/qiita-dev/qiita_core/support_files/ci_rootca.crt
           export QIITA_CONFIG_FP=`pwd`/qiita-dev/qiita_core/support_files/config_test_local.cfg
           sed "s#/home/runner/work/qiita/qiita#${PWD}/qiita-dev/#g" `pwd`/qiita-dev/qiita_core/support_files/config_test.cfg > ${QIITA_CONFIG_FP}
 
@@ -123,7 +123,7 @@ jobs:
           COVER_PACKAGE: ${{ matrix.cover_package }}
         run: |
           conda activate qtp-sequencing
-          export QIITA_SERVER_CERT=`pwd`/qiita-dev/qiita_core/support_files/server.crt
+          export QIITA_SERVER_CERT=`pwd`/qiita-dev/qiita_core/support_files/ci_rootca.crt
           export QIITA_CONFIG_FP=`pwd`/qiita-dev/qiita_core/support_files/config_test_local.cfg
 
           nosetests --with-doctest --with-coverage -v --cover-package=qtp_sequencing

diff --git a/qtp_sequencing/summary.py b/qtp_sequencing/summary.py
@@ -7,6 +7,7 @@
 # -----------------------------------------------------------------------------
 
 from hashlib import md5
+from os import remove
 from os.path import basename, join, dirname, exists
 from base64 import b64encode
 from io import BytesIO
@@ -163,6 +164,7 @@ def _summary_not_demultiplexed(artifact_type, filepaths):
                     fdata = f'{dirname(fp)}/qtp-sequencing-validate-data.csv'
                     if exists(fdata):
                         df = pd.read_csv(fdata, index_col=None)
+                        remove(fdata)
 
                 if df is None:
                     cmd = f'fqtools count {fp}'