Stochastic Schrödinger equation

.buildkite/CUDA_Ext.yml

@@ -0,0 +1,33 @@
+steps:
+  - label: "CUDA Julia {{matrix.version}}"
+    matrix:
+      setup:
+        version:
+          - "1.10" # oldest
+          #- "1"    # latest
+    plugins:
+      - JuliaCI/julia#v1:
+          version: "{{matrix.version}}"
+      - JuliaCI/julia-test#v1:
+          test_args: "--quickfail"
+      - JuliaCI/julia-coverage#v1:
+          codecov: true
+          dirs:
+            - src
+            - ext
+    agents:
+      queue: "juliagpu"
+      cuda: "*"
+    env:
+      GROUP: "CUDA_Ext"
+      SECRET_CODECOV_TOKEN: "ZfhQu/IcRLqNyZ//ZNs5sjBPaV76IHfU5gui52Qn+Rp8tOurukqgScuyDt+3HQ4R0hJYBw1/Nqg6jmBsvWSc9NEUx8kGsUJFHfN3no0+b+PFxA8oJkWc9EpyIsjht5ZIjlsFWR3f0DpPqMEle/QyWOPcal63CChXR8oAoR+Fz1Bh8GkokLlnC8F9Ugp9xBlu401GCbyZhvLTZnNIgK5yy9q8HBJnBg1cPOhI81J6JvYpEmcIofEzFV/qkfpTUPclu43WNoFX2DZPzbxilf3fsAd5/+nRkRfkNML8KiN4mnmjHxPPbuY8F5zC/PS5ybXtDpfvaMQc01WApXCkZk0ZAQ==;U2FsdGVkX1+eDT7dqCME5+Ox5i8GvWRTQbwiP/VYjapThDbxXFDeSSIC6Opmon+M8go22Bun3bat6Fzie65ang=="
+    timeout_in_minutes: 60
+    if: | 
+        // Don't run Buildkite if the commit message includes the text [skip ci], [ci skip], or [no ci]
+        // Don't run Buildkite for PR draft
+        // Only run Buildkite when new commits and PR are made to main branch
+        build.message !~ /\[skip ci\]/ &&
+        build.message !~ /\[ci skip\]/ &&
+        build.message !~ /\[no ci\]/   &&
+        !build.pull_request.draft      &&
+        (build.branch =~ /main/ || build.pull_request.base_branch =~ /main/)

.buildkite/pipeline.yml

@@ -1,25 +1,16 @@
+# see: https://github.com/staticfloat/forerunner-buildkite-plugin
 steps:
-  - label: "QuantumToolboxCUDAExt"
+  - label: ":runner: Dynamically launch pipelines"
     plugins:
-      - JuliaCI/julia#v1:
-          version: "1"
-      - JuliaCI/julia-test#v1:
-          test_args: "--quickfail"
-      - JuliaCI/julia-coverage#v1:
-          dirs:
-            - src
-            - ext
+      - staticfloat/forerunner: # CUDA.jl tests
+          watch:
+            - ".buildkite/pipeline.yml"
+            - ".buildkite/CUDA_Ext.yml"
+            - "src/**"
+            - "ext/QuantumToolboxCUDAExt.jl"
+            - "test/runtests.jl"
+            - "test/ext-test/cuda_ext.jl"
+            - "Project.toml"
+          target: ".buildkite/CUDA_Ext.yml"
     agents:
       queue: "juliagpu"
-      cuda: "*"
-    env:
-      GROUP: "CUDA_Ext"
-      SECRET_CODECOV_TOKEN: # "encrypted codecov token"
-    timeout_in_minutes: 60
-    if: | 
-        // Don't run Buildkite if the commit message includes the text [skip tests]
-        // Don't run Buildkite for PR draft
-        // Only run Buildkite when new commits and PR are made to main branch
-        build.message !~ /\[skip tests\]/ &&
-        !build.pull_request.draft         &&
-        (build.branch =~ /main/ || build.pull_request.base_branch =~ /main/)

.github/ISSUE_TEMPLATE/bug_report.yaml

@@ -37,7 +37,7 @@ body:
     attributes:
       label: Your Environment
       description: Please use `QuantumToolbox.about()` or `QuantumToolbox.versioninfo()` to get the information about your environment and paste it here (automatically formatted)
-      placeholder: "QuantumToolbox  Ver. ***\nLinearSolve     Ver. ***\nOrdinaryDiffEq  Ver. ***\nJulia Version: ***\nOS       : ***\nWORD_SIZE: ***\nLIBM     : ***\nLLVM     : ***\nBLAS     : ***"
+      placeholder: "Julia              Ver. ***\nQuantumToolbox     Ver. ***\nLinearSolve        Ver. ***\nOrdinaryDiffEqCore Ver. ***\nOS       : ***\nWORD_SIZE: ***\nLIBM     : ***\nLLVM     : ***\nBLAS     : ***"
       render: shell
     validations:
       required: true

.github/pull_request_template.md

@@ -3,16 +3,16 @@ Thank you for contributing to `QuantumToolbox.jl`! Please make sure you have fin
 
 - [ ] Please read [Contributor Covenant Code of Conduct](https://github.com/qutip/QuantumToolbox.jl/blob/main/CODE_OF_CONDUCT.md)
 - [ ] Any code changes were done in a way that does not break public API
-- [ ] Appropriate tests were added.
-- [ ] Any code changes should be formatted by running: `julia -e 'using JuliaFormatter; format(".")'`
-- [ ] All documentation (in `docs/` folder) related to code changes were updated.
+- [ ] Appropriate tests were added and tested locally by running: `make test`.
+- [ ] Any code changes should be `julia` formatted by running: `make format`.
+- [ ] All documents (in `docs/` folder) related to code changes were updated and able to build locally by running `make docs`.
 
 Request for a review after you have completed all the tasks. If you have not finished them all, you can also open a [Draft Pull Request](https://github.blog/2019-02-14-introducing-draft-pull-requests/) to let the others know this on-going work.
 
 ## Description
 Describe the proposed change here.
 
 ## Related issues or PRs
-Please mention the related issues or PRs here. If the PR fixes an issue, use the keyword close/closes/closed/fix/fixes/fixed/resolve/resolves/resolved followed by the issue id, e.g. fix #1234
+Please mention the related issues or PRs here. If the PR fixes an issue, use the keyword close/closes/closed/fix/fixes/fixed/resolve/resolves/resolved followed by the issue id, e.g. fix #[id]
 
-## Additional context
+## Additional context

.github/workflows/CI-Julia-nightly.yml

@@ -0,0 +1,61 @@
+name: Runtests (Julia nightly)
+
+on:
+  push:
+    branches:
+      - 'main'
+    paths:
+      - '.github/workflows/CI-Julia-nightly.yml'
+      - 'src/**'
+      - 'ext/**'
+      - 'test/runtests.jl'
+      - 'test/core-test/**'
+      - 'Project.toml'
+  pull_request:
+    branches:
+      - 'main'
+    paths:
+      - '.github/workflows/CI-Julia-nightly.yml'
+      - 'src/**'
+      - 'ext/**'
+      - 'test/runtests.jl'
+      - 'test/core-test/**'
+      - 'Project.toml'
+    types:
+      - opened
+      - reopened
+      - synchronize
+      - ready_for_review
+
+jobs:
+  test:
+    name: ${{ matrix.os }} - ${{ matrix.arch }} ( ${{ matrix.group }} )
+    runs-on: ${{ matrix.os }}
+    permissions: # needed to allow julia-actions/cache to delete old caches that it has created
+      actions: write
+      contents: read
+    if: ${{ !github.event.pull_request.draft }}
+    strategy:
+      fail-fast: false
+      matrix:
+        version:
+          - 'nightly'
+        os:
+          - 'ubuntu-latest'
+        arch:
+          - 'x64'
+        group:
+          - 'Core'
+          - 'Code-Quality'
+
+    steps:
+      - uses: actions/checkout@v4
+      - uses: julia-actions/setup-julia@v2
+        with:
+          version: ${{ matrix.version }}
+          arch: ${{ matrix.arch }}
+      - uses: julia-actions/cache@v2
+      - uses: julia-actions/julia-buildpkg@v1
+      - uses: julia-actions/julia-runtest@v1
+        env:
+          GROUP: ${{ matrix.group }}

.github/workflows/CI.yml

@@ -8,7 +8,8 @@ on:
       - '.github/workflows/CI.yml'
       - 'src/**'
       - 'ext/**'
-      - 'test/**'
+      - 'test/runtests.jl'
+      - 'test/core-test/**'
       - 'Project.toml'
   pull_request:
     branches:
@@ -17,7 +18,8 @@ on:
       - '.github/workflows/CI.yml'
       - 'src/**'
       - 'ext/**'
-      - 'test/**'
+      - 'test/runtests.jl'
+      - 'test/core-test/**'
       - 'Project.toml'
     types:
       - opened
@@ -27,8 +29,8 @@ on:
 
 jobs:
   test:
-    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} ( ${{ matrix.group }} )
-    runs-on: ${{ matrix.os }}
+    name: Julia ${{ matrix.version }} - ${{ matrix.node.os }} - ${{ matrix.node.arch }} ( ${{ matrix.group }} )
+    runs-on: ${{ matrix.node.os }}
     permissions: # needed to allow julia-actions/cache to delete old caches that it has created
       actions: write
       contents: read
@@ -38,49 +40,39 @@ jobs:
       matrix:
         # for core tests (latest and oldest supported versions)
         version:
-          - '1.7'  # oldest
-          - '1'    # latest
-        os:
-          - ubuntu-latest
-          - windows-latest
-        arch:
-          - x64
-        group:
-          - Core
-
-        include:
-          # for core tests on macOS
-          - version: '1.7'      # oldest (julia v1.7 does not support M-series chip)
-            os: 'macOS-13'      # Intel chip
-            arch: 'x64'
-            group: 'Core'
-          - version: '1'        # latest
-            os: 'macOS-latest'  # M-series chip
-            arch: 'arm64'
-            group: 'Core'
-
-          # for core tests (intermediate versions)
-          - version: '1.8'
-            os: 'ubuntu-latest'
+          - '1.10' # oldest
+        #  - '1'    # latest
+        node:
+          - os: 'ubuntu-latest'
             arch: 'x64'
-            group: 'Core'
-          - version: '1.9'
-            os: 'ubuntu-latest'
+          - os: 'windows-latest'
             arch: 'x64'
-            group: 'Core'
+          - os: 'macOS-latest'
+            arch: 'arm64'
+        group:
+          - 'Core'
 
+        include:
           # for code quality tests
           - version: '1'
-            os: 'ubuntu-latest'
-            arch: 'x64'
+            node: 
+              os: 'ubuntu-latest'
+              arch: 'x64'
             group: 'Code-Quality'
 
+          # for core tests (intermediate versions)
+          # - version: '1.x'
+          #   node:
+          #     os: 'ubuntu-latest'
+          #     arch: 'x64'
+          #   group: 'Core'
+
     steps:
       - uses: actions/checkout@v4
       - uses: julia-actions/setup-julia@v2
         with:
           version: ${{ matrix.version }}
-          arch: ${{ matrix.arch }}
+          arch: ${{ matrix.node.arch }}
       - uses: julia-actions/cache@v2
       - uses: julia-actions/julia-buildpkg@v1
       - uses: julia-actions/julia-runtest@v1

.github/workflows/FormatCheck.yml

@@ -45,6 +45,6 @@ jobs:
                 write(stdout, output)
                 write(stdout, "-----\n")
                 write(stdout, "Please format them by running the following command:\n")
-                write(stdout, "julia -e \"using JuliaFormatter; format(\\\".\\\")\"")
+                write(stdout, "make format")
                 exit(1)
             end'

Makefile

@@ -0,0 +1,24 @@
+JULIA:=julia
+
+default: help
+
+docs:
+	${JULIA} --project=docs -e 'using Pkg; Pkg.develop(PackageSpec(path=pwd())); Pkg.instantiate()'
+	${JULIA} --project=docs docs/make.jl
+
+format:
+	${JULIA} -e 'using JuliaFormatter; format(".")'
+
+test:
+	${JULIA} --project -e 'using Pkg; Pkg.resolve(); Pkg.test()'
+
+all: format test docs
+
+help:
+	@echo "The following make commands are available:"
+	@echo " - make docs: instantiate and build the documentation"
+	@echo " - make format: format codes with JuliaFormatter"
+	@echo " - make test: run the tests"
+	@echo " - make all: run every commands above"
+
+.PHONY: default docs format test all help

Project.toml

@@ -1,23 +1,29 @@
 name = "QuantumToolbox"
 uuid = "6c2fb7c5-b903-41d2-bc5e-5a7c320b9fab"
 authors = ["Alberto Mercurio", "Luca Gravina", "Yi-Te Huang"]
-version = "0.12.0"
+version = "0.14.1"
 
 [deps]
 ArrayInterface = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
+DiffEqBase = "2b5f629d-d688-5b77-993f-72d75c75574e"
 DiffEqCallbacks = "459566f4-90b8-5000-8ac3-15dfb0a30def"
+DiffEqNoiseProcess = "77a26b50-5914-5dd7-bc55-306e6241c503"
 FFTW = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341"
 Graphs = "86223c79-3864-5bf0-83f7-82e725a168b6"
 IncompleteLU = "40713840-3770-5561-ab4c-a76e7d0d7895"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
-LinearMaps = "7a12625a-238d-50fd-b39a-03d52299707e"
 LinearSolve = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"
-OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
+OrdinaryDiffEqCore = "bbf590c4-e513-4bbe-9b18-05decba2e5d8"
+OrdinaryDiffEqTsit5 = "b1df2697-797e-41e3-8120-5422d3b24e4a"
 Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
 Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
 Reexport = "189a3867-3050-52da-a836-e630ba90ab69"
+SciMLBase = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
+SciMLOperators = "c0aeaf25-5076-4817-a8d5-81caf7dfa961"
 SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
 SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b"
+StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c"
+StochasticDiffEq = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0"
 
 [weakdeps]
 CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
@@ -28,21 +34,27 @@ QuantumToolboxCUDAExt = "CUDA"
 [compat]
 ArrayInterface = "6, 7"
 CUDA = "5"
+DiffEqBase = "6"
 DiffEqCallbacks = "2 - 3.1, 3.8"
+DiffEqNoiseProcess = "5"
 FFTW = "1.5"
 Graphs = "1.7"
 IncompleteLU = "0.2"
 LinearAlgebra = "<0.0.1, 1"
-LinearMaps = "3"
 LinearSolve = "2"
-OrdinaryDiffEq = "6"
+OrdinaryDiffEqCore = "1"
+OrdinaryDiffEqTsit5 = "1"
 Pkg = "<0.0.1, 1"
 Random = "<0.0.1, 1"
 Reexport = "1"
+SciMLBase = "2"
+SciMLOperators = "0.3"
 SparseArrays = "<0.0.1, 1"
 SpecialFunctions = "2"
+StochasticDiffEq = "6"
+StaticArraysCore = "1"
 Test = "<0.0.1, 1"
-julia = "1.7"
+julia = "1.10"
 
 [extras]
 CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"