Add low memory JSON reader for cudf.pandas

cpp/src/io/json/read_json.cu

@@ -193,7 +193,8 @@ datasource::owning_buffer<rmm::device_uvector<char>> get_record_range_raw_input(
   size_t chunk_size                         = reader_opts.get_byte_range_size();
 
   CUDF_EXPECTS(total_source_size ? chunk_offset < total_source_size : !chunk_offset,
-               "Invalid offsetting");
+               "Invalid offsetting",
+               std::invalid_argument);
   auto should_load_all_sources = !chunk_size || chunk_size >= total_source_size - chunk_offset;
   chunk_size = should_load_all_sources ? total_source_size - chunk_offset : chunk_size;
 

cpp/src/io/utilities/datasource.cpp

@@ -217,7 +217,7 @@ class memory_mapped_source : public file_source {
 
   void map(int fd, size_t offset, size_t size)
   {
-    CUDF_EXPECTS(offset < _file.size(), "Offset is past end of file");
+    CUDF_EXPECTS(offset < _file.size(), "Offset is past end of file", std::overflow_error);
 
     // Offset for `mmap()` must be page aligned
     _map_offset = offset & ~(sysconf(_SC_PAGESIZE) - 1);

python/cudf/cudf/_lib/json.pyx

@@ -10,14 +10,15 @@ from cudf.core.buffer import acquire_spill_lock
 from libcpp cimport bool
 
 cimport cudf._lib.pylibcudf.libcudf.io.types as cudf_io_types
+from cudf._lib.column cimport Column
 from cudf._lib.io.utils cimport add_df_col_struct_names
 from cudf._lib.pylibcudf.io.types cimport compression_type
 from cudf._lib.pylibcudf.libcudf.io.json cimport json_recovery_mode_t
 from cudf._lib.pylibcudf.libcudf.io.types cimport compression_type
 from cudf._lib.pylibcudf.libcudf.types cimport data_type, type_id
 from cudf._lib.pylibcudf.types cimport DataType
 from cudf._lib.types cimport dtype_to_data_type
-from cudf._lib.utils cimport data_from_pylibcudf_io
+from cudf._lib.utils cimport _data_from_columns, data_from_pylibcudf_io
 
 import cudf._lib.pylibcudf as plc
 
@@ -98,28 +99,48 @@ cpdef read_json(object filepaths_or_buffers,
         else:
             raise TypeError("`dtype` must be 'list like' or 'dict'")
 
-    table_w_meta = plc.io.json.read_json(
-        plc.io.SourceInfo(filepaths_or_buffers),
-        processed_dtypes,
-        c_compression,
-        lines,
-        byte_range_offset = byte_range[0] if byte_range is not None else 0,
-        byte_range_size = byte_range[1] if byte_range is not None else 0,
-        keep_quotes = keep_quotes,
-        mixed_types_as_string = mixed_types_as_string,
-        prune_columns = prune_columns,
-        recovery_mode = _get_json_recovery_mode(on_bad_lines)
-    )
-
-    df = cudf.DataFrame._from_data(
-        *data_from_pylibcudf_io(
-            table_w_meta
+    if cudf.get_option("mode.pandas_compatible") and lines:
+        res_cols, res_col_names, res_child_names = plc.io.json.chunked_read_json(
+            plc.io.SourceInfo(filepaths_or_buffers),
+            processed_dtypes,
+            c_compression,
+            keep_quotes = keep_quotes,
+            mixed_types_as_string = mixed_types_as_string,
+            prune_columns = prune_columns,
+            recovery_mode = _get_json_recovery_mode(on_bad_lines)
+        )
+        df = cudf.DataFrame._from_data(
+            *_data_from_columns(
+                columns=[Column.from_pylibcudf(plc) for plc in res_cols],
+                column_names=res_col_names,
+                index_names=None
+               )
+            )
+        add_df_col_struct_names(df, res_child_names)
+        return df
+    else:
+        table_w_meta = plc.io.json.read_json(
+            plc.io.SourceInfo(filepaths_or_buffers),
+            processed_dtypes,
+            c_compression,
+            lines,
+            byte_range_offset = byte_range[0] if byte_range is not None else 0,
+            byte_range_size = byte_range[1] if byte_range is not None else 0,
+            keep_quotes = keep_quotes,
+            mixed_types_as_string = mixed_types_as_string,
+            prune_columns = prune_columns,
+            recovery_mode = _get_json_recovery_mode(on_bad_lines)
+        )
+
+        df = cudf.DataFrame._from_data(
+            *data_from_pylibcudf_io(
+                table_w_meta
+            )
         )
-    )
 
-    # Post-processing to add in struct column names
-    add_df_col_struct_names(df, table_w_meta.child_names)
-    return df
+        # Post-processing to add in struct column names
+        add_df_col_struct_names(df, table_w_meta.child_names)
+        return df
 
 
 @acquire_spill_lock()

python/cudf/cudf/_lib/pylibcudf/io/json.pxd

@@ -35,3 +35,14 @@ cpdef void write_json(
     str true_value = *,
     str false_value = *
 )
+
+cpdef tuple chunked_read_json(
+    SourceInfo source_info,
+    list dtypes = *,
+    compression_type compression = *,
+    bool keep_quotes = *,
+    bool mixed_types_as_string = *,
+    bool prune_columns = *,
+    json_recovery_mode_t recovery_mode = *,
+    int chunk_size= *,
+)

python/cudf/cudf/_lib/pylibcudf/io/json.pyx

@@ -6,6 +6,7 @@ from libcpp.string cimport string
 from libcpp.utility cimport move
 from libcpp.vector cimport vector
 
+from cudf._lib.pylibcudf.concatenate cimport concatenate
 from cudf._lib.pylibcudf.io.types cimport (
     SinkInfo,
     SourceInfo,
@@ -50,6 +51,144 @@ cdef map[string, schema_element] _generate_schema_map(list dtypes):
     return schema_map
 
 
+cdef json_reader_options _setup_json_reader_options(
+        SourceInfo source_info,
+        list dtypes,
+        compression_type compression,
+        bool lines,
+        size_type byte_range_offset,
+        size_type byte_range_size,
+        bool keep_quotes,
+        bool mixed_types_as_string,
+        bool prune_columns,
+        json_recovery_mode_t recovery_mode):
+
+    cdef vector[data_type] types_vec
+    cdef json_reader_options opts = move(
+        json_reader_options.builder(source_info.c_obj)
+        .compression(compression)
+        .lines(lines)
+        .byte_range_offset(byte_range_offset)
+        .byte_range_size(byte_range_size)
+        .recovery_mode(recovery_mode)
+        .build()
+    )
+
+    if dtypes is not None:
+        if isinstance(dtypes[0], tuple):
+            opts.set_dtypes(move(_generate_schema_map(dtypes)))
+        else:
+            for dtype in dtypes:
+                types_vec.push_back((<DataType>dtype).c_obj)
+            opts.set_dtypes(types_vec)
+
+    opts.enable_keep_quotes(keep_quotes)
+    opts.enable_mixed_types_as_string(mixed_types_as_string)
+    opts.enable_prune_columns(prune_columns)
+    return opts
+
+
+cpdef tuple chunked_read_json(
+    SourceInfo source_info,
+    list dtypes = None,
+    compression_type compression = compression_type.AUTO,
+    bool keep_quotes = False,
+    bool mixed_types_as_string = False,
+    bool prune_columns = False,
+    json_recovery_mode_t recovery_mode = json_recovery_mode_t.FAIL,
+    int chunk_size=100_000_000,
+):
+    """Reads an JSON file into a :py:class:`~.types.TableWithMetadata`.
+
+    Parameters
+    ----------
+    source_info : SourceInfo
+        The SourceInfo object to read the JSON file from.
+    dtypes : list, default None
+        Set data types for the columns in the JSON file.
+
+        Each element of the list has the format
+        (column_name, column_dtype, list of child dtypes), where
+        the list of child dtypes is an empty list if the child is not
+        a nested type (list or struct dtype), and is of format
+        (column_child_name, column_child_type, list of grandchild dtypes).
+    compression: CompressionType, default CompressionType.AUTO
+        The compression format of the JSON source.
+    keep_quotes : bool, default False
+        Whether the reader should keep quotes of string values.
+    mixed_types_as_string : bool, default False
+        If True, mixed type columns are returned as string columns.
+        If `False` parsing mixed type columns will thrown an error.
+    prune_columns : bool, default False
+        Whether to only read columns specified in dtypes.
+    recover_mode : JSONRecoveryMode, default JSONRecoveryMode.FAIL
+        Whether to raise an error or set corresponding values to null
+        when encountering an invalid JSON line.
+    chunk_size : int, default 100_000_000 bytes.
+        The number of bytes to be read in chunks.
+        The chunk_size should be set to at least row_size.
+
+    Returns
+    -------
+    tuple
+        A tuple of (columns, column_name, child_names)
+    """
+    cdef size_type c_range_size = (
+        chunk_size if chunk_size is not None else 0
+    )
+    cdef json_reader_options opts = _setup_json_reader_options(
+        source_info=source_info,
+        dtypes=dtypes,
+        compression=compression,
+        lines=True,
+        byte_range_offset=0,
+        byte_range_size=0,
+        keep_quotes=keep_quotes,
+        mixed_types_as_string=mixed_types_as_string,
+        prune_columns=prune_columns,
+        recovery_mode=recovery_mode,
+    )
+
+    # Read JSON
+    cdef table_with_metadata c_result
+
+    final_columns = []
+    meta_names = None
+    child_names = None
+    i = 0
+    while True:
+        opts.set_byte_range_offset(c_range_size * i)
+        opts.set_byte_range_size(c_range_size)
+
+        try:
+            with nogil:
+                c_result = move(cpp_read_json(opts))
+        except (ValueError, OverflowError):
+            break
+        if meta_names is None:
+            meta_names = [info.name.decode() for info in c_result.metadata.schema_info]
+        if child_names is None:
+            child_names = TableWithMetadata._parse_col_names(
+                c_result.metadata.schema_info
+            )
+        new_chunk = [
+            col for col in TableWithMetadata.from_libcudf(
+                c_result).columns
+        ]
+
+        if len(final_columns) == 0:
+            final_columns = new_chunk
+        else:
+            for col_idx in range(len(meta_names)):
+                final_columns[col_idx] = concatenate(
+                    [final_columns[col_idx], new_chunk[col_idx]]
+                )
+                # Must drop any residual GPU columns to save memory
+                new_chunk[col_idx] = None
+        i += 1
+    return (final_columns, meta_names, child_names)
+
+
 cpdef TableWithMetadata read_json(
     SourceInfo source_info,
     list dtypes = None,
@@ -76,14 +215,17 @@ cpdef TableWithMetadata read_json(
         the list of child dtypes is an empty list if the child is not
         a nested type (list or struct dtype), and is of format
         (column_child_name, column_child_type, list of grandchild dtypes).
-    compression_type: CompressionType, default CompressionType.AUTO
+    compression: CompressionType, default CompressionType.AUTO
         The compression format of the JSON source.
     byte_range_offset : size_type, default 0
         Number of bytes to skip from source start.
     byte_range_size : size_type, default 0
         Number of bytes to read. By default, will read all bytes.
     keep_quotes : bool, default False
         Whether the reader should keep quotes of string values.
+    mixed_types_as_string : bool, default False
+        If True, mixed type columns are returned as string columns.
+        If `False` parsing mixed type columns will thrown an error.
     prune_columns : bool, default False
         Whether to only read columns specified in dtypes.
     recover_mode : JSONRecoveryMode, default JSONRecoveryMode.FAIL
@@ -95,29 +237,19 @@ cpdef TableWithMetadata read_json(
     TableWithMetadata
         The Table and its corresponding metadata (column names) that were read in.
     """
-    cdef vector[data_type] types_vec
-    cdef json_reader_options opts = move(
-        json_reader_options.builder(source_info.c_obj)
-        .compression(compression)
-        .lines(lines)
-        .byte_range_offset(byte_range_offset)
-        .byte_range_size(byte_range_size)
-        .recovery_mode(recovery_mode)
-        .build()
+    cdef json_reader_options opts = _setup_json_reader_options(
+        source_info=source_info,
+        dtypes=dtypes,
+        compression=compression,
+        lines=lines,
+        byte_range_offset=byte_range_offset,
+        byte_range_size=byte_range_size,
+        keep_quotes=keep_quotes,
+        mixed_types_as_string=mixed_types_as_string,
+        prune_columns=prune_columns,
+        recovery_mode=recovery_mode,
     )
 
-    if dtypes is not None:
-        if isinstance(dtypes[0], tuple):
-            opts.set_dtypes(move(_generate_schema_map(dtypes)))
-        else:
-            for dtype in dtypes:
-                types_vec.push_back((<DataType>dtype).c_obj)
-            opts.set_dtypes(types_vec)
-
-    opts.enable_keep_quotes(keep_quotes)
-    opts.enable_mixed_types_as_string(mixed_types_as_string)
-    opts.enable_prune_columns(prune_columns)
-
     # Read JSON
     cdef table_with_metadata c_result
 

python/cudf/cudf/_lib/utils.pxd

@@ -19,3 +19,4 @@ cdef table_view table_view_from_table(tbl, ignore_index=*) except*
 cdef columns_from_unique_ptr(unique_ptr[table] c_tbl)
 cdef columns_from_table_view(table_view tv, object owners)
 cdef columns_from_pylibcudf_table(tbl)
+cdef _data_from_columns(columns, column_names, index_names=*)

python/cudf/cudf/tests/test_csv.py

@@ -1191,7 +1191,7 @@ def test_csv_reader_byte_range_type_corner_case(tmpdir):
     ).to_csv(fname, chunksize=100000)
 
     byte_range = (2_147_483_648, 0)
-    with pytest.raises(RuntimeError, match="Offset is past end of file"):
+    with pytest.raises(OverflowError, match="Offset is past end of file"):
         cudf.read_csv(fname, byte_range=byte_range, header=None)
 
 

python/cudf/cudf/tests/test_json.py

@@ -1428,3 +1428,19 @@ def test_json_reader_on_bad_lines(on_bad_lines):
                 orient="records",
                 on_bad_lines=on_bad_lines,
             )
+
+
+def test_chunked_json_reader():
+    df = cudf.DataFrame(
+        {
+            "a": ["aaaa"] * 9_00_00_00,
+            "b": list(range(0, 9_00_00_00)),
+        }
+    )
+    buf = BytesIO()
+    df.to_json(buf, lines=True, orient="records", engine="cudf")
+    buf.seek(0)
+    df = df.to_pandas()
+    with cudf.option_context("mode.pandas_compatible", True):
+        gdf = cudf.read_json(buf, lines=True)
+    assert_eq(df, gdf)