Create Biosensor and Travel Phylogeny of life - Python Class for Making DNA-Sensors by Travelling through Phylogeny of life includes Searching, Traversing, Making phylogeny Graph, Downloading Genomic Data using ftp and Creating K-mers manually to find unique Dna Fragment for target node to accelerate development project of Biosensors in BioInformatics. Extremely easy to learn and use, friendly construction.
- Networkx
- Biopython
- Pandas
- Sqlite3
pip install networkx
pip install biopython
pip install pandassudo apt-get install sqlite3
then, Run main.py
python main.py
Setup Python version == 2.7.15- Clone repository
git clone https://github.com/DBT-BIF/Biosensor-Python.git - Install depndencies using pip : Networkx, Biopython, Pandas
- Install sqlite3 ( DB browser for SQLite)
- Unzip files in
datafolder - Create two empty folders and name them as : path_travelled, kmer_folder
- finally run
main.py
MIT License
Copyright (c) 2018 Bioinformatics Infrastructure Facility
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
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