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merge master

merge master #587

Workflow file for this run

name: XGBoost-R-Tests
on: [push, pull_request]
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
permissions:
contents: read # to fetch code (actions/checkout)
concurrency:
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
cancel-in-progress: true
jobs:
lintr:
runs-on: ${{ matrix.config.os }}
name: Run R linters on OS ${{ matrix.config.os }}, R ${{ matrix.config.r }}, Compiler ${{ matrix.config.compiler }}, Build ${{ matrix.config.build }}
strategy:
matrix:
config:
- {os: ubuntu-latest, r: 'release'}
env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
RSPM: ${{ matrix.config.rspm }}
steps:
- uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29 # v4.1.6
with:
submodules: 'true'
- uses: r-lib/actions/setup-r@929c772977a3a13c8733b363bf5a2f685c25dd91 # v2.9.0
with:
r-version: ${{ matrix.config.r }}
- name: Cache R packages
uses: actions/cache@6849a6489940f00c2f30c0fb92c6274307ccb58a # v4.1.2
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ runner.os }}-r-${{ matrix.config.r }}-7-${{ hashFiles('R-package/DESCRIPTION') }}
restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-7-${{ hashFiles('R-package/DESCRIPTION') }}
- name: Install dependencies
shell: Rscript {0}
run: |
source("./R-package/tests/helper_scripts/install_deps.R")
- name: Run lintr
run: |
MAKEFLAGS="-j$(nproc)" R CMD INSTALL R-package/
Rscript tests/ci_build/lint_r.R $(pwd)
test-Rpkg:
runs-on: ${{ matrix.config.os }}
name: Test R on OS ${{ matrix.config.os }}, R ${{ matrix.config.r }}, Compiler ${{ matrix.config.compiler }}, Build ${{ matrix.config.build }}
strategy:
fail-fast: false
matrix:
config:
- {os: windows-latest, r: 'release', compiler: 'mingw', build: 'autotools'}
- {os: ubuntu-latest, r: 'release', compiler: 'none', build: 'cmake'}
env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
RSPM: ${{ matrix.config.rspm }}
steps:
- name: Install system dependencies
run: |
sudo apt update
sudo apt install libcurl4-openssl-dev libssl-dev libssh2-1-dev libgit2-dev libglpk-dev libxml2-dev libharfbuzz-dev libfribidi-dev
if: matrix.config.os == 'ubuntu-latest'
- uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29 # v4.1.6
with:
submodules: 'true'
- uses: r-lib/actions/setup-r@929c772977a3a13c8733b363bf5a2f685c25dd91 # v2.9.0
with:
r-version: ${{ matrix.config.r }}
- name: Cache R packages
uses: actions/cache@6849a6489940f00c2f30c0fb92c6274307ccb58a # v4.1.2
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ runner.os }}-r-${{ matrix.config.r }}-7-${{ hashFiles('R-package/DESCRIPTION') }}
restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-7-${{ hashFiles('R-package/DESCRIPTION') }}
- uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
with:
python-version: "3.10"
architecture: 'x64'
- uses: r-lib/actions/setup-tinytex@v2
- name: Install dependencies
shell: Rscript {0}
run: |
source("./R-package/tests/helper_scripts/install_deps.R")
- name: Test R
run: |
python tests/ci_build/test_r_package.py --compiler='${{ matrix.config.compiler }}' --build-tool="${{ matrix.config.build }}" --task=check
if: matrix.config.compiler != 'none'
- name: Test R
run: |
python tests/ci_build/test_r_package.py --build-tool="${{ matrix.config.build }}" --task=check
if: matrix.config.compiler == 'none'
test-R-on-Debian:
name: Test R package on Debian
runs-on: ubuntu-latest
container:
image: rhub/debian-gcc-release
steps:
- name: Install system dependencies
run: |
# Must run before checkout to have the latest git installed.
# No need to add pandoc, the container has it figured out.
apt update && apt install libcurl4-openssl-dev libssl-dev libssh2-1-dev libgit2-dev libglpk-dev libxml2-dev libharfbuzz-dev libfribidi-dev git -y
- name: Trust git cloning project sources
run: |
git config --global --add safe.directory "${GITHUB_WORKSPACE}"
- uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29 # v4.1.6
with:
submodules: 'true'
- name: Install dependencies
shell: bash -l {0}
run: |
Rscript -e "source('./R-package/tests/helper_scripts/install_deps.R')"
- name: Test R
shell: bash -l {0}
run: |
python3 tests/ci_build/test_r_package.py --r=/usr/bin/R --build-tool=autotools --task=check
- uses: dorny/paths-filter@v3
id: changes
with:
filters: |
r_package:
- 'R-package/**'
- name: Run document check
if: steps.changes.outputs.r_package == 'true'
run: |
python3 tests/ci_build/test_r_package.py --r=/usr/bin/R --task=doc