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1. SAIGE_GPU SAIGE_GPU Public

   Accelerating Genome- and Phenome-Wide Association Studies using GPUs – A case study using data from the Million Veteran Program. Link - https://www.biorxiv.org/content/10.1101/2024.05.17.594583v1.f…

   C++ 1

2. scRNASeq-Workflow-and-Cell-predictions scRNASeq-Workflow-and-Cell-predictions Public

   This repository provides scripts for Geneformer x single-cell RNA-seq (scRNA-seq) analysis, covering preprocessing, normalization, dimensionality reduction, clustering, and visualization. Ideal for…

   Python

3. Genetic-Distance-assisted-PRS Genetic-Distance-assisted-PRS Public

   a Genetic Distance-assisted PRS Combination Pipeline for Diverse Genetic Ancestries

   R 2

4. scMultiOmics-IntegrationTool scMultiOmics-IntegrationTool Public

   This repository provides tools and pipelines for integrating single-cell ATAC-seq and RNA-seq data, enabling streamlined multi-omics analysis at single-cell resolution. It helps analyze chromatin a…

   R 1

5. Human_Protein_Atlas_challenge-kaggle-2021 Human_Protein_Atlas_challenge-kaggle-2021 Public

   Submission of Human Protein Atlas - Single Cell Classification on Kaggle 2021. A weakly supervised multi-label classification problem.

   Jupyter Notebook

6. PB-Dataset-Recommender_Engine PB-Dataset-Recommender_Engine Public

   Algorithms for NCBI, SRA, EBI datasets recommendation and how to get around with comparing your own Datasets. Recommender systems | Bio-NLP

   Jupyter Notebook 2 1