feat(helm): add support for PgBouncer (#818)

Closes #819
reanahub · Aug 23, 2024 · 7b472fe · 7b472fe
1 parent cd94d12
commit 7b472fe
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Showing 10 changed files with 167 additions and 55 deletions.
diff --git a/helm/configurations/values-dev.yaml b/helm/configurations/values-dev.yaml
@@ -26,3 +26,6 @@ components:
       image: docker.io/reanahub/reana-message-broker
     reana_ui:
       image: docker.io/reanahub/reana-ui
+
+pgbouncer:
+  enabled: true
diff --git a/helm/reana/README.md b/helm/reana/README.md
@@ -98,6 +98,12 @@ This Helm automatically prefixes all names using the release name to avoid colli
 | `reana_hostname`                                         | REANA hostname (e.g. reana.example.org)                                              | None                                            |
 | `namespace_runtime`                                      | Namespace in which the REANA runtime pods (workflow engines, jobs etc...) will run   | `.Release.Namespace`                            |
 | `naming_scheme`                                          | REANA component naming scheme                                                        | None                                            |
+| `pgbouncer.enabled`                                      | Instantiate PgBouncer inside the cluster to pool database connections                | false                                           |
+| `pgbouncer.image`                                        | [PgBouncer image](https://hub.docker.com/r/bitnami/pgbouncer/) to use                | `bitnami/pgbouncer:1.23.1`                      |
+| `pgbouncer.pool_mode`                                    | Pool mode to use (session, transaction, statement)                                   | transaction                                     |
+| `pgbouncer.max_client_conn`                              | Maximum number of client connections allowed                                         | 1000                                            |
+| `pgbouncer.max_db_connections`                           | Maximum number of server connections allowed                                         | 100                                             |
+| `pgbouncer.environment`                                  | Additional PgBouncer environment variables                                           | `{}`                                            |
 | `secrets.cern.sso.CERN_CONSUMER_KEY`                     | CERN SSO consumer key                                                                | None                                            |
 | `secrets.cern.sso.CERN_CONSUMER_SECRET`                  | **[Do not use in production, use secrets instead]** CERN SSO consumer secret         | None                                            |
 | `secrets.database.password`                              | **[Do not use in production, use secrets instead]** PostgreSQL database password     | None                                            |

diff --git a/helm/reana/templates/cronjobs.yaml b/helm/reana/templates/cronjobs.yaml
@@ -30,19 +30,18 @@ spec:
             tty: true
             stdin: true
             {{- end }}
+            envFrom:
+              - configMapRef:
+                  name: {{ include "reana.prefix" . }}-database-config
             env:
             {{- if .Values.reana_hostname }}
             - name: REANA_HOSTNAME
               value: {{ .Values.reana_hostname }}
             {{- end }}
-            {{- range $key, $value := .Values.db_env_config }}
-            - name: {{ $key }}
-              value: {{ $value | quote }}
-            {{- end }}
             {{- if .Values.debug.enabled }}
             - name: FLASK_ENV
               value:  "development"
-            {{- else }}
+            {{- end }}
             - name: REANA_DB_USERNAME
               valueFrom:
                 secretKeyRef:
@@ -53,7 +52,6 @@ spec:
                 secretKeyRef:
                   name: {{ include "reana.prefix" . }}-db-secrets
                   key: password
-            {{- end }}
             - name: REANA_NOTIFICATIONS_ENABLED
               value: "{{ .Values.notifications.enabled }}"
             - name: REANA_EMAIL_RECEIVER
@@ -154,21 +152,20 @@ spec:
             tty: true
             stdin: true
             {{- end }}
+            envFrom:
+              - configMapRef:
+                  name: {{ include "reana.prefix" . }}-database-config
             env:
             - name: REANA_PERIODIC_RESOURCE_QUOTA_UPDATE_POLICY
               value: "true"
             {{- if .Values.reana_hostname }}
             - name: REANA_HOSTNAME
               value: {{ .Values.reana_hostname }}
             {{- end }}
-            {{- range $key, $value := .Values.db_env_config }}
-            - name: {{ $key }}
-              value: {{ $value | quote }}
-            {{- end }}
             {{- if .Values.debug.enabled }}
             - name: FLASK_ENV
               value:  "development"
-            {{- else }}
+            {{- end }}
             - name: REANA_DB_USERNAME
               valueFrom:
                 secretKeyRef:
@@ -179,7 +176,6 @@ spec:
                 secretKeyRef:
                   name: {{ include "reana.prefix" . }}-db-secrets
                   key: password
-            {{- end }}
             - name: REANA_COMPONENT_PREFIX
               value: {{ include "reana.prefix" . }}
             - name: REANA_INFRASTRUCTURE_KUBERNETES_NAMESPACE
@@ -239,19 +235,18 @@ spec:
             tty: true
             stdin: true
             {{- end }}
+            envFrom:
+              - configMapRef:
+                  name: {{ include "reana.prefix" . }}-database-config
             env:
             {{- if .Values.reana_hostname }}
             - name: REANA_HOSTNAME
               value: {{ .Values.reana_hostname }}
             {{- end }}
-            {{- range $key, $value := .Values.db_env_config }}
-            - name: {{ $key }}
-              value: {{ $value | quote }}
-            {{- end }}
             {{- if .Values.debug.enabled }}
             - name: FLASK_ENV
               value:  "development"
-            {{- else }}
+            {{- end }}
             - name: REANA_DB_USERNAME
               valueFrom:
                 secretKeyRef:
@@ -262,7 +257,6 @@ spec:
                 secretKeyRef:
                   name: {{ include "reana.prefix" . }}-db-secrets
                   key: password
-            {{- end }}
             - name: REANA_COMPONENT_PREFIX
               value: {{ include "reana.prefix" . }}
             - name: REANA_ADMIN_ACCESS_TOKEN
@@ -333,19 +327,18 @@ spec:
             tty: true
             stdin: true
             {{- end }}
+            envFrom:
+              - configMapRef:
+                  name: {{ include "reana.prefix" . }}-database-config
             env:
             {{- if .Values.reana_hostname }}
             - name: REANA_HOSTNAME
               value: {{ .Values.reana_hostname }}
             {{- end }}
-            {{- range $key, $value := .Values.db_env_config }}
-            - name: {{ $key }}
-              value: {{ $value | quote }}
-            {{- end }}
             {{- if .Values.debug.enabled }}
             - name: FLASK_ENV
               value:  "development"
-            {{- else }}
+            {{- end }}
             - name: REANA_DB_USERNAME
               valueFrom:
                 secretKeyRef:
@@ -356,7 +349,6 @@ spec:
                 secretKeyRef:
                   name: {{ include "reana.prefix" . }}-db-secrets
                   key: password
-            {{- end }}
             - name: REANA_COMPONENT_PREFIX
               value: {{ include "reana.prefix" . }}
             - name: REANA_ADMIN_ACCESS_TOKEN

diff --git a/helm/reana/templates/database-config.yaml b/helm/reana/templates/database-config.yaml
@@ -0,0 +1,17 @@
+apiVersion: v1
+kind: ConfigMap
+metadata:
+  name: {{ include "reana.prefix" . }}-database-config
+  namespace: {{ .Release.Namespace }}
+data:
+  REANA_DB_NAME: {{ .Values.db_env_config.REANA_DB_NAME | quote }}
+  {{- if .Values.pgbouncer.enabled }}
+  REANA_DB_HOST: {{ include "reana.prefix" . }}-pgbouncer
+  REANA_DB_PORT: "6432"
+  {{- else if .Values.components.reana_db.enabled }}
+  REANA_DB_HOST: {{ include "reana.prefix" . }}-db
+  REANA_DB_PORT: "5432"
+  {{- else }}
+  REANA_DB_HOST: {{ .Values.db_env_config.REANA_DB_HOST | quote }}
+  REANA_DB_PORT: {{ .Values.db_env_config.REANA_DB_PORT | quote }}
+  {{- end }}
diff --git a/helm/reana/templates/pgbouncer.yaml b/helm/reana/templates/pgbouncer.yaml
@@ -0,0 +1,88 @@
+{{- if .Values.pgbouncer.enabled }}
+apiVersion: v1
+kind: Service
+metadata:
+  name: {{ include "reana.prefix" . }}-pgbouncer
+  namespace: {{ .Release.Namespace }}
+spec:
+  type: ClusterIP
+  selector:
+    app: {{ include "reana.prefix" . }}-pgbouncer
+  ports:
+  - port: 6432
+    targetPort: 6432
+    protocol: TCP
+---
+apiVersion: v1
+kind: ConfigMap
+metadata:
+  name: {{ include "reana.prefix" . }}-pgbouncer-conf
+  namespace: {{ .Release.Namespace }}
+data:
+  PGBOUNCER_POOL_MODE: {{ .Values.pgbouncer.pool_mode | quote }}
+  PGBOUNCER_MAX_CLIENT_CONN: {{ .Values.pgbouncer.max_client_conn | quote }}
+  PGBOUNCER_MAX_DB_CONNECTIONS: {{ .Values.pgbouncer.max_db_connections | quote }}
+  PGBOUNCER_DEFAULT_POOL_SIZE: {{ .Values.pgbouncer.max_db_connections | quote }}
+  {{- if .Values.components.reana_db.enabled }}
+  PGBOUNCER_DATABASE: reana
+  POSTGRESQL_HOST: {{ include "reana.prefix" . }}-db
+  POSTGRESQL_PORT: "5432"
+  {{- else }}
+  PGBOUNCER_DATABASE: {{ .Values.db_env_config.REANA_DB_NAME | quote }}
+  POSTGRESQL_HOST:  {{ .Values.db_env_config.REANA_DB_HOST | quote }}
+  POSTGRESQL_PORT:  {{ .Values.db_env_config.REANA_DB_PORT | quote }}
+  {{- end }}
+---
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  name: {{ include "reana.prefix" . }}-pgbouncer
+  namespace: {{ .Release.Namespace }}
+spec:
+  replicas: {{ if .Values.maintenance.enabled -}} 0 {{- else -}} 1 {{- end }}
+  selector:
+    matchLabels:
+      app: {{ include "reana.prefix" . }}-pgbouncer
+  template:
+    metadata:
+      labels:
+        app: {{ include "reana.prefix" . }}-pgbouncer
+    spec:
+      containers:
+      - name: pgbouncer
+        image: {{ .Values.pgbouncer.image | quote }}
+        ports:
+        - containerPort: 6432
+        envFrom:
+          - configMapRef:
+              name: {{ include "reana.prefix" . }}-pgbouncer-conf
+        env:
+        - name: POSTGRESQL_USERNAME
+          valueFrom:
+            secretKeyRef:
+              name: {{ include "reana.prefix" . }}-db-secrets
+              key: user
+        - name: POSTGRESQL_PASSWORD
+          valueFrom:
+            secretKeyRef:
+              name: {{ include "reana.prefix" . }}-db-secrets
+              key: password
+        - name: PGBOUNCER_USERLIST
+          valueFrom:
+            secretKeyRef:
+              name: {{ include "reana.prefix" . }}-pgbouncer-secrets
+              key: userlist
+        {{- range $key, $value := .Values.pgbouncer.environment }}
+        - name: {{ $key }}
+          value: {{ $value | quote }}
+        {{- end }}
+      {{- if .Values.node_label_infrastructuredb }}
+      {{- $full_label := split "=" .Values.node_label_infrastructuredb }}
+      nodeSelector:
+        {{ $full_label._0 }}: {{ $full_label._1 }}
+      {{- else if .Values.node_label_infrastructure }}
+      {{- $full_label := split "=" .Values.node_label_infrastructure }}
+      nodeSelector:
+        {{ $full_label._0 }}: {{ $full_label._1 }}
+      {{- end }}
+{{- end }}
diff --git a/helm/reana/templates/reana-db.yaml b/helm/reana/templates/reana-db.yaml
@@ -59,12 +59,6 @@ spec:
           value: "Europe/Zurich"
         - name: POSTGRES_DB
           value: reana
-        {{- if not .Values.debug.enabled }}
-        - name: POSTGRES_USER
-          value: reana
-        - name: POSTGRES_PASSWORD
-          value: reana
-        {{- else }}
         - name: POSTGRES_USER
           valueFrom:
             secretKeyRef:
@@ -75,7 +69,6 @@ spec:
             secretKeyRef:
               name: {{ include "reana.prefix" . }}-db-secrets
               key: password
-        {{- end }}
         volumeMounts:
           - mountPath: /var/lib/postgresql/data
             subPath: db

diff --git a/helm/reana/templates/reana-server.yaml b/helm/reana/templates/reana-server.yaml
@@ -67,6 +67,9 @@ spec:
             mountPath: '/var/reana/uwsgi'
           - name: reana-config
             mountPath: '/var/reana/config'
+        envFrom:
+          - configMapRef:
+              name: {{ include "reana.prefix" . }}-database-config
         env:
           - name: REANA_COMPONENT_PREFIX
             value: {{ include "reana.prefix" . }}
@@ -100,10 +103,6 @@ spec:
           - name: REANA_WORKFLOW_TERMINATION_QUOTA_UPDATE_POLICY
             value: {{ tpl .Values.quota.workflow_termination_update_policy . | default "null" }}
           {{- end }}
-          {{- range $key, $value := .Values.db_env_config }}
-          - name: {{ $key }}
-            value: {{ $value | quote }}
-          {{- end }}
           {{- range $key, $value := .Values.components.reana_server.environment }}
           - name: {{ $key }}
             value: {{ $value | quote }}
@@ -169,7 +168,7 @@ spec:
             value: ""
           - name: GIT_SSL_NO_VERIFY
             value: "true"
-          {{- else }}
+          {{- end }}
           - name: REANA_DB_USERNAME
             valueFrom:
               secretKeyRef:
@@ -180,7 +179,6 @@ spec:
               secretKeyRef:
                 name: {{ include "reana.prefix" . }}-db-secrets
                 key: password
-          {{- end }}
           - name: REANA_NOTIFICATIONS_ENABLED
             value: "{{ .Values.notifications.enabled }}"
           {{- if .Values.notifications.enabled }}
@@ -223,17 +221,16 @@ spec:
           {{- end }}
           - mountPath: {{ .Values.shared_storage.shared_volume_mount_path }}
             name: reana-shared-volume
+        envFrom:
+          - configMapRef:
+              name: {{ include "reana.prefix" . }}-database-config
         env:
         - name: REANA_COMPONENT_PREFIX
           value: {{ include "reana.prefix" . }}
         - name: REANA_INFRASTRUCTURE_KUBERNETES_NAMESPACE
           value: {{ .Release.Namespace }}
         - name: REANA_RUNTIME_KUBERNETES_NAMESPACE
           value: {{ .Values.namespace_runtime | default .Release.Namespace }}
-        {{- range $key, $value := .Values.db_env_config }}
-        - name: {{ $key }}
-          value: {{ $value | quote }}
-        {{- end }}
         {{- range $key, $value := .Values.components.reana_server.environment }}
         - name: {{ $key }}
           value: {{ $value | quote }}
@@ -256,7 +253,7 @@ spec:
           value: ""
         - name: GIT_SSL_NO_VERIFY
           value: "true"
-        {{- else }}
+        {{- end }}
         - name: REANA_DB_USERNAME
           valueFrom:
             secretKeyRef:
@@ -267,7 +264,6 @@ spec:
             secretKeyRef:
               name: {{ include "reana.prefix" . }}-db-secrets
               key: password
-        {{- end }}
         {{- if .Values.login }}
         - name: LOGIN_PROVIDERS_CONFIGS
           value: {{ .Values.login | toJson | quote }}