KMC 3.2.4

Changelog:

• fix in kmc_tools complex and minor fixes

KMC 3.2.3

Changelog:

• a couple of bugfixes related to input reading in some extreme cases

KMC 3.2.2

Changelog:

• experimental ARM support
• bz2 support dropped

KMC 3.2.1

Changelog:

• Small fixes related to counting k-mers from KMC database

KMC 3.2.0

Changelog:

• KFF support
• possibility to estimate k-mer abundance histogram with ntCard algorithm
• possibility to use KMC from C++ code using API
• possibility to store only k-mers in the database (no counters)
• bugfixes
• experimental and approximate homopolymer k-mer counting
• code cleanups
• small optimizations

KMC 3.1.1

Changelog:

• drop asmlib dependency
• drop vectorclasslib dependency
• experimental python wrapper for kmc API
• support reads of any length (for now only for fastq format)
• fixes related to gzipped input files
• fix for a case when there is no end of line after last line in the input file
• other small bug fixes

KMC 3.1.1RC1

A couple of bug fixes.

KMC 3.1.0

Changelog:

• Support for BAM input files
• New option in kmc_tools that allows to set specified value as a counter of each k-mer in database
• Option to not create output database was added (in some cases only stats produced by KMC are sufficient)
• Option to save execution summary in JSON format was added
• New option in kmc_tools filter operation was added: hard mask (replace with Ns all symbols in a read that are part of invalid k-mer)
• Small bug fixes

KMC 3.0.1

Minimal changes that allows to compile KMC with g++-4.8.

KMC 3.0.0

Main changes:

• gzipped files are handled more efficiently
• the second phase of algorithm is faster due to new sorting subroutine and other optimizations especially for larger k
• kmc_tools functionality was extended