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marekkokot edited this page May 20, 2022 · 4 revisions

Version 3.0

The examples showing how KMC tools can be used in existing projects for significant speedup and memory usage reduction are given below. Consult the recent paper (especially supplementary material for details).

Version 2.3

  • Windows — kmc (main application, generates database of k-mers): 64-bit executable, MD5 sum: d44d5aba053a8596a0faf8d80a1d03b4

  • Windows — kmc_tools (for operations on sets of k-mers): 64-bit executable, MD5 sum: 87e5cacfca3dc7294d57abdc58a53c13

  • Windows — kmc_dump (for listing k-mers from kmc-generated database): 64-bit executable, MD5 sum: 1f0f32afeeb82c118badaac2ab1c3dd9

  • Linux — kmc (main application, generates database of k-mers): 64-bit (GCC compiled) executable, MD5 sum: 53108d4f3dc2b3944aff3c8040a39911

  • Linux — kmc_tools (for operations on sets of k-mers): 64-bit (GCC compiled) executable, MD5 sum: 3c1434f449729f07c66b8c29d8c18ffa

  • Linux — kmc_dump (for listing k-mers from kmc-generated database): 64-bit (GCC compiled) executable, MD5 sum: b958ccb64a54b14d9d0693247d7b61ed

  • Mac OS — kmc (main application, generates database of k-mers): 64-bit executable, MD5 sum: bd5d6d4ac3dcb54072d287e6568e35e1

  • Mac OS — kmc_tools (for operations on sets of k-mers): 64-bit executable, MD5 sum: 4198cd5a73ed98205634f4a8672cd143

  • Mac OS — kmc_dump (for listing k-mers from kmc-generated database): 64-bit executable, MD5 sum: 64f87473146623696a8b39c371d1c417

  • KMC API description v. 2.3.0.

  • KMC tools description v. 2.3.0.

Version 2.2

  • Windows — kmc (main application, generates database of k-mers): 64-bit executable, MD5 sum: e9e9a25b002f78324a978feba83da001
  • Windows — kmc_dump (for listing k-mers from kmc-generated database): 64-bit executable, MD5 sum: ba8152be9f485648854cb3353886e9a7
  • Linux — kmc (main application, generates database of k-mers): 64-bit (GCC compiled) executable, MD5 sum: 3e6868c8b2c5544d3d07dea6100f456c
  • Linux — kmc_dump (for listing k-mers from kmc-generated database): 64-bit (GCC compiled) executable, MD5 sum: 25988b522364bab0093f79d0f034f889
  • Mac OS — kmc (main application, generates database of k-mers): 64-bit executable, MD5 sum: b80a4bb96439ad2734810723c0a4a7dd
  • Mac OS — kmc_dump (for listing k-mers from kmc-generated database): 64-bit executable, MD5 sum: 524ed7375a4c39f464fb893d48777b61

Version 2.1.1

  • Windows — kmc (main application, generates database of k-mers): 64-bit executable, MD5 sum: 27c106b46dd64dc88a7a8ef7b7a644b2
  • Windows — kmc_dump (for listing k-mers from kmc-generated database): 64-bit executable, MD5 sum: 76e12cd4c5e759117451cd7687494ca3
  • Linux — kmc (main application, generates database of k-mers): 64-bit (GCC compiled) executable, MD5 sum: 82bc29c4a81b3f1d785c7980a06aa062
  • Linux — kmc_dump (for listing k-mers from kmc-generated database): 64-bit (GCC compiled) executable, MD5 sum: 0847e5d40bace8fbb8e36f1d1dc29539
  • Mac OS — kmc (main application, generates database of k-mers): 64-bit executable, MD5 sum: 3a2d9bdf38269dc668b4eee85926775a
  • Mac OS — kmc_dump (for listing k-mers from kmc-generated database): 64-bit executable, MD5 sum: fa7ddb279204928816de19e606830a0c

Version 2.1

  • Windows — kmc (main application, generates database of k-mers): 64-bit executable, MD5 sum: b4877fc12216fa05ee184016dd0747d9
  • Windows — kmc_dump (for listing k-mers from kmc-generated database): 64-bit executable, MD5 sum: 1bf298f5ff81a8cfdf1f318b469be81f
  • Linux — kmc (main application, generates database of k-mers): 64-bit (GCC compiled) executable, MD5 sum: 238e19396c2af192cd89d4215906b019
  • Linux — kmc_dump (for listing k-mers from kmc-generated database): 64-bit (GCC compiled) executable, MD5 sum: f854fdec943f38ee34c131ecb0175856
  • Mac OS — kmc (main application, generates database of k-mers): 64-bit executable, MD5 sum: f854fdec943f38ee34c131ecb0175856
  • Mac OS — kmc_dump (for listing k-mers from kmc-generated database): 64-bit executable, MD5 sum: f854fdec943f38ee34c131ecb0175856

Version 2.0

  • Windows — kmc (main application, generates database of k-mers): 64-bit executable, MD5 sum: ff4908187b0b5fe4816619f13fa7f040
  • Windows — kmc_dump (for listing k-mers from kmc-generated database): 64-bit executable, MD5 sum: 00a0c6b93680c05fb44afca61952c96f
  • Linux — kmc (main application, generates database of k-mers): 64-bit (GCC compiled) executable, MD5 sum: 98da5b98d078ea5f1c5c27e73107263f
  • Linux — kmc_dump (for listing k-mers from kmc-generated database): 64-bit (GCC compiled) executable, MD5 sum: 00a0c6b93680c05fb44afca61952c96f
  • The source codes are written in C++ and can be compiled with GCC for various operating systems. You can download:
    • zip file (MD5 sum: ff4908187b0b5fe4816619f13fa7f040) or
    • tgz file (MD5 sum: 3d36398f63277bf1c7c8bd69a026cd40). To compile the source codes you will need the following C++ libraries: OpenMP, Boost::thread, Boost::filesystem.

Version 1.0

  • Windows — kmc (main application, generates database of k-mers): 64-bit executable, MD5 sum: ff4908187b0b5fe4816619f13fa7f040
  • Windows — kmc_dump (for listing k-mers from kmc-generated database): 64-bit executable, MD5 sum: 669dd432a24dc1fb99d6256940064a00
  • Linux — kmc (main application, generates database of k-mers): 64-bit (GCC compiled) executable, MD5 sum: c86d421fe70fa8f9723d1a34975b9a67
  • Linux — kmc_dump (for listing k-mers from kmc-generated database): 64-bit (GCC compiled) executable, MD5 sum: a318afee42166111c44cb3bfddf8e79d
  • The source codes are written in C++ and can be compiled with GCC for various operating systems. You can download:
    • zip file (MD5 sum: c86d421fe70fa8f9723d1a34975b9a67) or
    • tgz file (MD5 sum: a318afee42166111c44cb3bfddf8e79d). To compile the source codes you will need the following C++ libraries: OpenMP, Boost::thread, Boost::filesystem.

Version 0.3

  • Windows — kmc (main application, generates database of k-mers): 64-bit executable, MD5 sum: 9deb98fe00c9592d0aece98f5122b1cf
  • Windows — kmc_dump (for listing k-mers from kmc-generated database): 64-bit executable, MD5 sum: 44ae750ef30939d62a5c1c1ab3ff3f74
  • Linux — kmc (main application, generates database of k-mers): 64-bit (GCC compiled) executable, MD5 sum: 0e1f99b87d59348c04722553d81b4291
  • Linux — kmc_dump (for listing k-mers from kmc-generated database): 64-bit (GCC compiled) executable, MD5 sum: be2ce5f53319e9cdee52d9ad6ee36f29
  • The source codes are written in C++ and can be compiled with GCC for various operating systems. You can download:
    • zip file (MD5 sum: c86d421fe70fa8f9723d1a34975b9a67)
    • tgz file (MD5 sum: 6b21a2ebb0a28d2e02d71da644d8c75b)

To compile the source codes you will need the following C++ libraries: OpenMP, Boost::thread, Boost::filesystem.

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