Cancer Drug Response

Airflow

Get the data ready

cd airflow
docker-compose up -d

Then visit localhost:8080

Place DAG files in airflow\dags. See examples at https://airflow.apache.org/docs/stable/tutorial.html#example-pipeline-definition .

Place python requirements at airflow\requirements.txt and then restart the containers with docker-compose up -d --force-recreate

API for Drug Response in local enviorment

Install

Requirements from requirements.txt

Run main.py

Go to localhost:8000

Data Input

3 CSV files:

1. Gene CNV gene_CNV.csv
2. Gene Expression gene_Expression.csv
3. Gene Mutation gene_Mutation.csv

Data Collected From https://amp.pharm.mssm.edu/Harmonizome/dataset/CCLE+Cell+Line+Gene+Expression+Profiles

The format of the input data must be in the provided format from the gathered data