Update rawgit.com hashes

NEWS.md

@@ -1,5 +1,6 @@
 # Changes in release 4.4.0
 
+- Extend `plot_graph()` to display subcomponents. Check out arguments `from`, `mode`, `order`, and `shrink_edges`. The [graphing vignette](https://github.com/wlandau-lilly/drake/blob/master/vignettes/graph.Rmd) has demonstrations.
 - Add `"future_lapply"` parallelism: parallel backends supported by the [future](https://github.com/HenrikBengtsson/future) and [future.batchtools](https://github.com/HenrikBengtsson/future.batchtools) packages. See `?backend` for examples and the [parallelism vignette](https://github.com/wlandau-lilly/drake/blob/master/vignettes/parallelism.Rmd) for an introductory tutorial. More advanced instruction can be found in the `future` and `future.batchtools` packages themselves.
 - Cache diagnostic information of targets that fail and retrieve diagnostic info with `diagnose()`.
 - Add an optional `hook` argument to `make()` to wrap around `build()`. That way, users can more easily control the side effects of distributed jobs. For example, to redirect error messages to a file in `make(..., parallelism = "Makefile", jobs = 2, hook = my_hook)`, `my_hook` should be something like `function(code){withr::with_message_sink("messages.txt", code)}`.

README.md

@@ -193,6 +193,7 @@ The [CRAN page](https://CRAN.R-project.org/package=drake) links to multiple rend
 ```r
 vignette(package = "drake")            # List the vignettes.
 vignette("drake")                      # High-level intro.
+vignette("graph")                      # Visualilze the workflow graph.
 vignette("quickstart")                 # Walk through a simple example.
 vignette("parallelism") # Extensive prallel computing functionality.
 vignette("storage")                    # Learn how drake stores your stuff.
@@ -235,9 +236,10 @@ Similarly to imported functions like `reg2()`, `drake` reacts to changes in
 1. Upstream targets.
 1. For [dynamic knitr reports](https://yihui.name/knitr) (with `knit('your_report.Rmd')` as a command in your workflow plan data frame), targets and imports mentioned in calls to `readd()` and `loadd()` in the code chunks to be evaluated. `Drake` treats these targets and imports as dependencies of the compiled output target (say, 'report.md').
 
-See the `quickstart` vignette for demonstrations of `drake`'s reproducibility and reactivity.
+See the `quickstart` vignette for demonstrations of `drake`'s reproducibility and reactivity. See the `graph` vignette for a detailed walkthrough of the visualizations.
 
 ```r
+vignette("graph")
 vignette("quickstart")
 ```
 

vignettes/caution.Rmd

@@ -246,7 +246,7 @@ plot_graph(my_plan, width = "100%", height = "500px")
 ```
 
 <iframe
-src = "https://cdn.rawgit.com/wlandau-lilly/drake/74a87231/images/outdated.html"
+src = "https://cdn.rawgit.com/wlandau-lilly/drake/b0169ed6/images/outdated.html"
 width = "100%" height = "600px" allowtransparency="true"
 style="border: none; box-shadow: none">
 </iframe>

vignettes/drake.Rmd

@@ -191,6 +191,7 @@ The [CRAN page](https://CRAN.R-project.org/package=drake) links to multiple rend
 ```{r vignettesdrakermd, eval = FALSE}
 vignette(package = "drake")            # List the vignettes.
 vignette("drake")                      # High-level intro.
+vignette("graph")                      # Visualilze the workflow graph.
 vignette("quickstart")                 # Walk through a simple example.
 vignette("parallelism") # Lots of parallel computing support.
 vignette("storage")                    # Learn how drake stores your stuff.
@@ -233,9 +234,10 @@ Similarly to imported functions like `reg2()`, `drake` reacts to changes in
 1. Upstream targets.
 1. For [dynamic knitr reports](https://yihui.name/knitr/) (with `knit('your_report.Rmd')` as a command in your workflow plan data frame), targets and imports mentioned in calls to `readd()` and `loadd()` in the code chunks to be evaluated. `Drake` treats these targets and imports as dependencies of the compiled output target (say, `report.md`).
 
-See the `quickstart` vignette for demonstrations of `drake`'s reproducibility and reactivity.
+See the `quickstart` vignette for demonstrations of `drake`'s reproducibility and reactivity. See the `graph` vignette for a walkthrough of the workflow plan visualizations.
 
 ```{r drakermdquickvignette, eval = FALSE}
+vignette("graph")
 vignette("quickstart")
 ```
 
@@ -262,7 +264,7 @@ plot_graph(my_plan, width = "100%", height = "500px")
 ```
 
 <iframe
-src = "https://cdn.rawgit.com/wlandau-lilly/drake/74a87231/images/reg2.html"
+src = "https://cdn.rawgit.com/wlandau-lilly/drake/b0169ed6/images/reg2.html"
 width = "100%" height = "600px" allowtransparency="true"
 style="border: none; box-shadow: none">
 </iframe>

vignettes/graph.Rmd

@@ -29,7 +29,7 @@ plot_graph(my_plan)
 ```
 
 <iframe
-src = "https://cdn.rawgit.com/wlandau-lilly/drake/74a87231/images/outdated.html"
+src = "https://cdn.rawgit.com/wlandau-lilly/drake/b0169ed6/images/outdated.html"
 width = "100%" height = "600px" allowtransparency="true"
 style="border: none; box-shadow: none">
 </iframe>
@@ -50,7 +50,7 @@ plot_graph(my_plan)
 But after a `make()`, we are all caught up.
 
 <iframe
-src = "https://cdn.rawgit.com/wlandau-lilly/drake/74a87231/images/built.html"
+src = "https://cdn.rawgit.com/wlandau-lilly/drake/b0169ed6/images/built.html"
 width = "100%" height = "600px" allowtransparency="true"
 style="border: none; box-shadow: none">
 </iframe>
@@ -67,7 +67,7 @@ plot_graph(my_plan)
 ```
 
 <iframe
-src = "https://cdn.rawgit.com/wlandau-lilly/drake/74a87231/images/reg2.html"
+src = "https://cdn.rawgit.com/wlandau-lilly/drake/b0169ed6/images/reg2.html"
 width = "100%" height = "600px" allowtransparency="true"
 style="border: none; box-shadow: none">
 </iframe>
@@ -81,7 +81,7 @@ plot_graph(my_plan, targets_only = TRUE)
 ```
 
 <iframe
-src = "https://cdn.rawgit.com/wlandau-lilly/drake/74a87231/images/targetsonly.html"
+src = "https://cdn.rawgit.com/wlandau-lilly/drake/b0169ed6/images/targetsonly.html"
 width = "100%" height = "600px" allowtransparency="true"
 style="border: none; box-shadow: none">
 </iframe>
@@ -94,7 +94,7 @@ plot_graph(my_plan, from = c("regression2_small", "regression2_large"))
 ```
 
 <iframe
-src = "https://cdn.rawgit.com/wlandau-lilly/drake/74a87231/images/fromout.html"
+src = "https://cdn.rawgit.com/wlandau-lilly/drake/b0169ed6/images/fromout.html"
 width = "100%" height = "600px" allowtransparency="true"
 style="border: none; box-shadow: none">
 </iframe>
@@ -107,7 +107,7 @@ plot_graph(my_plan, from = "small", mode = "in")
 ```
 
 <iframe
-src = "https://cdn.rawgit.com/wlandau-lilly/drake/74a87231/images/fromin.html"
+src = "https://cdn.rawgit.com/wlandau-lilly/drake/b0169ed6/images/fromin.html"
 width = "100%" height = "600px" allowtransparency="true"
 style="border: none; box-shadow: none">
 </iframe>
@@ -120,7 +120,7 @@ plot_graph(my_plan, from = "small", mode = "all", order = 1)
 ```
 
 <iframe
-src = "https://cdn.rawgit.com/wlandau-lilly/drake/74a87231/images/fromall.html"
+src = "https://cdn.rawgit.com/wlandau-lilly/drake/b0169ed6/images/fromall.html"
 width = "100%" height = "600px" allowtransparency="true"
 style="border: none; box-shadow: none">
 </iframe>
@@ -138,7 +138,7 @@ plot_graph(
 ```
 
 <iframe
-src = "https://cdn.rawgit.com/wlandau-lilly/drake/74a87231/images/shrink.html"
+src = "https://cdn.rawgit.com/wlandau-lilly/drake/b0169ed6/images/shrink.html"
 width = "100%" height = "600px" allowtransparency="true"
 style="border: none; box-shadow: none">
 </iframe>

vignettes/parallelism.Rmd

@@ -39,7 +39,7 @@ plot_graph(my_plan, width = "100%", height = "500px")
 ```
 
 <iframe
-src = "https://cdn.rawgit.com/wlandau-lilly/drake/74a87231/images/reg2.html"
+src = "https://cdn.rawgit.com/wlandau-lilly/drake/b0169ed6/images/reg2.html"
 width = "100%" height = "600px" allowtransparency="true"
 style="border: none; box-shadow: none">
 </iframe>

vignettes/quickstart.Rmd

@@ -129,7 +129,7 @@ plot_graph(my_plan, width = "100%", height = "500px")
 ```
 
 <iframe
-src = "https://cdn.rawgit.com/wlandau-lilly/drake/74a87231/images/outdated.html"
+src = "https://cdn.rawgit.com/wlandau-lilly/drake/b0169ed6/images/outdated.html"
 width = "100%" height = "600px" allowtransparency="true"
 style="border: none; box-shadow: none">
 </iframe>
@@ -274,7 +274,7 @@ plot_graph(my_plan, width = "100%", height = "500px")
 ```
 
 <iframe
-src = "https://cdn.rawgit.com/wlandau-lilly/drake/74a87231/images/built.html"
+src = "https://cdn.rawgit.com/wlandau-lilly/drake/b0169ed6/images/built.html"
 width = "100%" height = "600px" allowtransparency="true"
 style="border: none; box-shadow: none">
 </iframe>
@@ -329,7 +329,7 @@ plot_graph(my_plan, width = "100%", height = "500px")
 ```
 
 <iframe
-src = "https://cdn.rawgit.com/wlandau-lilly/drake/74a87231/images/reg2.html"
+src = "https://cdn.rawgit.com/wlandau-lilly/drake/b0169ed6/images/reg2.html"
 width = "100%" height = "600px" allowtransparency="true"
 style="border: none; box-shadow: none">
 </iframe>

vignettes/timing.Rmd

@@ -116,7 +116,7 @@ plot_graph(my_plan, width = "100%", height = "500px")
 ```
 
 <iframe
-src = "https://cdn.rawgit.com/wlandau-lilly/drake/74a87231/images/reg2.html"
+src = "https://cdn.rawgit.com/wlandau-lilly/drake/b0169ed6/images/reg2.html"
 width = "100%" height = "600px" allowtransparency="true" 
 style="border: none; box-shadow: none">
 </iframe>