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Our lab has been following along with the progress of the PET BIDS specification as it develops, and it seems that the JSON sidecar is quite extensive. Is there a timeline for PET BIDS sidecar generation in dcm2niix? I believe we would be able to provide some PET sample data if it would be of use to you in developing this.
Thanks,
Lauren
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Hi Lauren,
Indeed PET BIDS includes much more metadata. I did not look into how much
of it can be automatically extracted from DICOMs yet, but I am hopeful.
We are struggling with getting example data, so if you can share some that
would be absolutely fantastic. You can email me at chrisgor@stanford.edu
Best,
Chris
On Thu, Feb 23, 2017 at 4:55 PM, lwallace233 ***@***.***> wrote:
Hello,
Our lab has been following along with the progress of the PET BIDS
specification as it develops, and it seems that the JSON sidecar is quite
extensive. Is there a timeline for PET BIDS sidecar generation in dcm2niix?
I believe we would be able to provide some PET sample data if it would be
of use to you in developing this.
Thanks,
Lauren
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Lauren-
Thanks for your sample images.
I updated dcm2niix to copy the numeric DICOM PET module attributes to the BIDS JSON output. It is unclear to me how one derives all of the values listed in the proposed BIDS PET extension given only the DICOM files. I suspect these will need to come from sources other than the DICOM images. I am closing this issue, as the latest release seems to convert many PET attributes. However, perhaps an expert in PET can generate some pull requests that can derive more attributes.
Hello,
Our lab has been following along with the progress of the PET BIDS specification as it develops, and it seems that the JSON sidecar is quite extensive. Is there a timeline for PET BIDS sidecar generation in dcm2niix? I believe we would be able to provide some PET sample data if it would be of use to you in developing this.
Thanks,
Lauren
The text was updated successfully, but these errors were encountered: