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New stable release ( v1.0.20211006) #551

Merged
merged 106 commits into from
Oct 7, 2021
Merged

New stable release ( v1.0.20211006) #551

merged 106 commits into from
Oct 7, 2021

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neurolabusc
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dcm2niix v1.0.20211006 from the development branch is the new stable release for the Fall 2021 stable release. Notable changes include:

  • Kludge for incorrect spatial coding of GE ABCD epipolar sequence.
  • Better handling of Philips enhanced DICOMs with huge headers.
  • Consistent conversion of Philips DWI regardless of instance numbers. For Philips R5.6 and later, volumes are sorted in acquired temporal order.
  • Consistent (temporal) ordering of Philips enhanced and classic DICOMs.
  • Improved heuristics for determining whether trigger time should be ignored or segmented for various Philips modalities and sequences: issues 395, 428, 499, 506, 533.
  • Improved Siemens MoCo detection to reduce false alarm warnings.
  • Default behavior is now to preserve original datatype (-l o): UINT16 datatype preserved. Previous behavior was to convert UINT16 to INT16 if this could be achieved losslessly (-l n). Previous method could create issues for tools like AFNI if some runs in a series were UINT16 (unsupported by AFNI so promoted to FLOAT32) and others were INT16. dcm2niix users have received warnings of this upcoming change in default behavior since Fall 2019.

neurolabusc and others added 30 commits April 3, 2021 08:53
Detect GE direct fieldmaps Update
MacPorts has dcm2niix available; a +docs variant is available for those desiring a man page, and it is installed with openjpeg and batch support. Pre-compiled binaries are available for ease of installation with the default MacPorts configuration.
neurolabusc and others added 29 commits August 11, 2021 17:20
…ty of slice re-ordering, improve ECAT success/failure warnings.
Thanks. Resolves [issue 544](#544).
Remove warning for early GE HyperBand dataset after validation
@neurolabusc neurolabusc merged commit 003f0d1 into master Oct 7, 2021
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8 participants