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| Original file line number | Diff line number | Diff line change |
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| @@ -1,43 +1,34 @@ | ||
| # Revdeps | ||
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| ## Failed to check (29) | ||
| ## Failed to check (20) | ||
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| |package |version |error |warning |note | | ||
| |:---------------|:-------|:-----|:-------|:----| | ||
| |alevinQC |? | | | | | ||
| |animalEKF |1.2 |1 | | | | ||
| |animaltracker |? | | | | | ||
| |antaresViz |? | | | | | ||
| |AovBay |0.1.0 |1 | | | | ||
| |bdclean |? | | | | | ||
| |chipPCR |1.0-2 |1 | | | | ||
| |ctsem |3.10.0 |1 | | | | ||
| |diveR |? | | | | | ||
| |DynNom |5.1 |1 | | | | ||
| |hydflood |? | | | | | ||
| |loon.shiny |? | | | | | ||
| |modchart |? | | | | | ||
| |MODIStsp |? | | | | | ||
| |protGear |? | | | | | ||
| |robmedExtra |0.1.0 |1 | | | | ||
| |RQuantLib |0.4.23 |1 | | | | ||
| |rstanarm |2.32.1 |1 | | | | ||
| |scPipe |? | | | | | ||
| |sen2r |? | | | | | ||
| |SensMap |0.7 |1 | | | | ||
| |Seurat |5.1.0 |1 | | | | ||
| |shinyTempSignal |0.0.8 |1 | | | | ||
| |Signac |1.13.0 |1 | | | | ||
| |simplevis |? | | | | | ||
| |statsr |0.3.0 |1 | | | | ||
| |teachingApps |? | | | | | ||
| |tidyvpc |1.5.1 |1 | | | | ||
| |TVTB |? | | | | | ||
| |package |version |error |warning |note | | ||
| |:------------------|:-------|:-----|:-------|:----| | ||
| |animalEKF |1.2 |1 | | | | ||
| |AovBay |0.1.0 |1 | | | | ||
| |Certara.VPCResults |3.0.2 |1 | | | | ||
| |chipPCR |1.0-2 |1 | | | | ||
| |ctsem |3.10.1 |1 | | | | ||
| |dartR.sim |? | | | | | ||
| |diveR |? | | | | | ||
| |gap |? | | | | | ||
| |jsmodule |? | | | | | ||
| |loon.shiny |? | | | | | ||
| |robmedExtra |0.1.1 |1 | | | | ||
| |rstanarm |2.32.1 |1 | | | | ||
| |SensMap |0.7 |1 | | | | ||
| |Seurat |5.1.0 |1 | |1 | | ||
| |shinyTempSignal |0.0.8 |1 | | | | ||
| |Signac |1.14.0 |1 | | | | ||
| |statsr |0.3.0 |1 | | | | ||
| |TestAnaAPP |1.1.2 |1 | | | | ||
| |tidyvpc |1.5.2 |1 | | | | ||
| |visR |? | | | | | ||
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| ## New problems (2) | ||
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| |package |version |error |warning |note | | ||
| |:-------|:-------|:--------|:-------|:------| | ||
| |[EgoCor](problems.md#egocor)|1.2.0 |1 __+1__ | |-1 | | ||
| |[mxfda](problems.md#mxfda)|0.2.1 | | |__+1__ | | ||
| |package |version |error |warning |note | | ||
| |:-------|:-------|:-----|:-------|:------| | ||
| |[HH](problems.md#hh)|3.1-52 | | |__+1__ | | ||
| |[PopED](problems.md#poped)|0.7.0 | | |__+1__ | | ||
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| Original file line number | Diff line number | Diff line change |
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| ## revdepcheck results | ||
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| We checked 1221 reverse dependencies (1208 from CRAN + 13 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. | ||
| We checked 1278 reverse dependencies (1277 from CRAN + 1 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. | ||
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| * We saw 2 new problems | ||
| * We failed to check 16 packages | ||
| * We failed to check 19 packages | ||
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| Issues with CRAN packages are summarised below. | ||
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| ### New problems | ||
| (This reports the first line of each new failure) | ||
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| * EgoCor | ||
| checking running R code from vignettes ... ERROR | ||
| * HH | ||
| checking installed package size ... NOTE | ||
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| * mxfda | ||
| * PopED | ||
| checking installed package size ... NOTE | ||
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| ### Failed to check | ||
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| * animalEKF (NA) | ||
| * AovBay (NA) | ||
| * chipPCR (NA) | ||
| * ctsem (NA) | ||
| * diveR (NA) | ||
| * DynNom (NA) | ||
| * loon.shiny (NA) | ||
| * robmedExtra (NA) | ||
| * RQuantLib (NA) | ||
| * rstanarm (NA) | ||
| * SensMap (NA) | ||
| * Seurat (NA) | ||
| * shinyTempSignal (NA) | ||
| * Signac (NA) | ||
| * statsr (NA) | ||
| * tidyvpc (NA) | ||
| * animalEKF (NA) | ||
| * AovBay (NA) | ||
| * Certara.VPCResults (NA) | ||
| * chipPCR (NA) | ||
| * ctsem (NA) | ||
| * dartR.sim (NA) | ||
| * diveR (NA) | ||
| * gap (NA) | ||
| * jsmodule (NA) | ||
| * loon.shiny (NA) | ||
| * robmedExtra (NA) | ||
| * rstanarm (NA) | ||
| * SensMap (NA) | ||
| * Seurat (NA) | ||
| * shinyTempSignal (NA) | ||
| * Signac (NA) | ||
| * statsr (NA) | ||
| * TestAnaAPP (NA) | ||
| * tidyvpc (NA) |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,93 +1,49 @@ | ||
| # EgoCor | ||
| # HH | ||
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| <details> | ||
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| * Version: 1.2.0 | ||
| * GitHub: https://github.com/julia-dyck/EgoCor | ||
| * Source code: https://github.com/cran/EgoCor | ||
| * Date/Publication: 2024-03-28 18:10:02 UTC | ||
| * Number of recursive dependencies: 74 | ||
| * Version: 3.1-52 | ||
| * GitHub: NA | ||
| * Source code: https://github.com/cran/HH | ||
| * Date/Publication: 2024-02-11 00:00:02 UTC | ||
| * Number of recursive dependencies: 165 | ||
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| Run `revdepcheck::cloud_details(, "EgoCor")` for more info | ||
| Run `revdepcheck::cloud_details(, "HH")` for more info | ||
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| </details> | ||
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| ## Newly broken | ||
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| * checking running R code from vignettes ... ERROR | ||
| ``` | ||
| Errors in running code in vignettes: | ||
| when running code in ‘Intro_to_EgoCor.Rmd’ | ||
| ... | ||
| Warning in gstat::fit.variogram(emp.sv, model = v, fit.sills = TRUE, fit.ranges = TRUE, : | ||
| linear model has singular covariance matrix | ||
| Warning in gstat::fit.variogram(emp.sv, model = v, fit.sills = TRUE, fit.ranges = TRUE, : | ||
| linear model has singular covariance matrix | ||
| Warning in gstat::fit.variogram(emp.sv, model = v, fit.sills = TRUE, fit.ranges = TRUE, : | ||
| No convergence after 200 iterations: try different initial values? | ||
| When sourcing ‘Intro_to_EgoCor.R’: | ||
| Error: missing value where TRUE/FALSE needed | ||
| Execution halted | ||
| ‘Intro_to_EgoCor.Rmd’ using ‘UTF-8’... failed | ||
| ``` | ||
| ## Newly fixed | ||
| * checking re-building of vignette outputs ... NOTE | ||
| ``` | ||
| Error(s) in re-building vignettes: | ||
| --- re-building ‘Intro_to_EgoCor.Rmd’ using rmarkdown | ||
| ``` | ||
| ## In both | ||
| * checking examples ... ERROR | ||
| * checking installed package size ... NOTE | ||
| ``` | ||
| Running examples in ‘EgoCor-Ex.R’ failed | ||
| The error most likely occurred in: | ||
| > ### Name: vario.reg.prep | ||
| > ### Title: Adjustment for covariates before semi-variogram model fitting | ||
| > ### Aliases: vario.reg.prep | ||
| > | ||
| > ### ** Examples | ||
| > | ||
| > ## Example 1 | ||
| ... | ||
| + } | ||
| Warning in check_dep_version() : | ||
| ABI version mismatch: | ||
| lme4 was built with Matrix ABI version 1 | ||
| Current Matrix ABI version is 0 | ||
| Please re-install lme4 from source or restore original ‘Matrix’ package | ||
| Error in initializePtr() : | ||
| function 'cholmod_factor_ldetA' not provided by package 'Matrix' | ||
| Calls: <Anonymous> ... initialize -> <Anonymous> -> initializePtr -> .Call | ||
| Execution halted | ||
| installed size is 5.1Mb | ||
| sub-directories of 1Mb or more: | ||
| R 1.5Mb | ||
| help 1.5Mb | ||
| ``` | ||
| # mxfda | ||
| # PopED | ||
| <details> | ||
| * Version: 0.2.1 | ||
| * GitHub: https://github.com/julia-wrobel/mxfda | ||
| * Source code: https://github.com/cran/mxfda | ||
| * Date/Publication: 2024-05-08 11:00:02 UTC | ||
| * Number of recursive dependencies: 220 | ||
| * Version: 0.7.0 | ||
| * GitHub: https://github.com/andrewhooker/PopED | ||
| * Source code: https://github.com/cran/PopED | ||
| * Date/Publication: 2024-10-07 19:30:02 UTC | ||
| * Number of recursive dependencies: 140 | ||
| Run `revdepcheck::cloud_details(, "mxfda")` for more info | ||
| Run `revdepcheck::cloud_details(, "PopED")` for more info | ||
| </details> | ||
| ## Newly broken | ||
| * checking installed package size ... NOTE | ||
| ``` | ||
| installed size is 5.6Mb | ||
| installed size is 5.5Mb | ||
| sub-directories of 1Mb or more: | ||
| data 4.0Mb | ||
| R 1.5Mb | ||
| doc 1.4Mb | ||
| test 1.1Mb | ||
| ``` | ||