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So, as part of the way that I wanted to separate this out I created a new bower.json file in the styles folder. Obviously this doesn't matter, all it will affect is the tree paths. I don't know what the full merits of doing/not doing it this way would be.
As for the actual cssTree: it needs to be pushed into the first parameter of broccoli-sass, see "inputTrees" here: https://github.com/joliss/broccoli-sass
I don't know how this differs with less (i barely even know sass at this stage).
Also I wasn't able to get this working locally, I kept getting bad reference errors.