Updated CI

.github/workflows/devel.yml

@@ -13,7 +13,7 @@ jobs:
 
     steps:
     - uses: actions/checkout@v3
-    - name: Set up Python 3.10
+    - name: Set up Python
       uses: actions/setup-python@v4
       with:
         python-version: "3.11"
@@ -40,7 +40,7 @@ jobs:
 
     steps:
     - uses: actions/checkout@v3
-    - name: Set up Python 3.10
+    - name: Set up Python
       uses: actions/setup-python@v4
       with:
         python-version: "3.11"

.github/workflows/main.yml

@@ -11,7 +11,7 @@ jobs:
 
     steps:
     - uses: actions/checkout@v3
-    - name: Set up Python 3.10
+    - name: Set up Python
       uses: actions/setup-python@v4
       with:
         python-version: "3.11"
@@ -21,7 +21,7 @@ jobs:
         sudo apt-get install -y libcurl4-openssl-dev
         python -m pip install --upgrade pip
         pip install wheel
-        pip install pytest-cov flake8 scikit-learn skranger git+https://github.com/saezlab/omnipath scanpy adjustText pypath-omnipath psutil igraph .
+        pip install pytest-cov flake8 scikit-learn git+https://github.com/saezlab/omnipath scanpy adjustText pypath-omnipath psutil igraph .
     - name: Lint with flake8
       run: |
         # stop the build if there are Python syntax errors or undefined names
@@ -43,7 +43,7 @@ jobs:
 
     steps:
     - uses: actions/checkout@v3
-    - name: Set up Python 3.10
+    - name: Set up Python
       uses: actions/setup-python@v4
       with:
         python-version: "3.11"
@@ -55,7 +55,7 @@ jobs:
         export PKG_CONFIG_PATH="/usr/local/opt/openssl@3/lib/pkgconfig"
         python -m pip install --upgrade pip
         pip install wheel
-        pip install pytest flake8 scikit-learn skranger git+https://github.com/saezlab/omnipath scanpy adjustText pypath-omnipath psutil igraph .
+        pip install pytest flake8 scikit-learn git+https://github.com/saezlab/omnipath scanpy adjustText pypath-omnipath psutil igraph .
     - name: Lint with flake8
       run: |
         # stop the build if there are Python syntax errors or undefined names

decoupler/plotting.py

@@ -862,7 +862,7 @@ def plot_metrics_boxplot(df, metric, groupby=None, figsize=(5, 5), dpi=100, ax=N
     sns = check_if_seaborn()
     plt = check_if_matplotlib()
 
-    if metric not in ['mcauroc', 'mcauprc', 'rank', 'nrank']:
+    if metric not in ['mcauroc', 'mcauprc', 'rank', 'nrank', 'recall']:
         raise ValueError('Argument metric must be either "mcauroc", "mcauprc", "rank" or "nrank".')
 
     # Subset metric