Merge branch 'u/mantepse/replace_lazy_power_series-32367' of trac.sag…

…emath.org:sage into t/34470/categories_lazy_series-34470
sagemath · Oct 5, 2022 · 56cef07 · 56cef07
2 parents 41ca99b + 4fc981b
commit 56cef07
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diff --git a/.vscode/settings.json b/.vscode/settings.json
@@ -33,5 +33,6 @@
         "Conda",
         "sagemath",
         "Cython"
-    ]
+    ],
+    "editor.formatOnType": true
 }
diff --git a/.zenodo.json b/.zenodo.json
@@ -1,10 +1,10 @@
 {
     "description": "Mirror of the Sage https://sagemath.org/ source tree", 
     "license": "other-open", 
-    "title": "sagemath/sage: 9.8.beta0", 
-    "version": "9.8.beta0", 
+    "title": "sagemath/sage: 9.8.beta1", 
+    "version": "9.8.beta1", 
     "upload_type": "software", 
-    "publication_date": "2022-09-25", 
+    "publication_date": "2022-09-29", 
     "creators": [
         {
             "affiliation": "SageMath.org", 
@@ -15,7 +15,7 @@
     "related_identifiers": [
         {
             "scheme": "url", 
-            "identifier": "https://github.com/sagemath/sage/tree/9.8.beta0", 
+            "identifier": "https://github.com/sagemath/sage/tree/9.8.beta1", 
             "relation": "isSupplementTo"
         }, 
         {

diff --git a/README.md b/README.md
@@ -79,7 +79,7 @@ If your Mac uses the Apple Silicon (M1, arm64) architecture:
   https://brew.sh/ required because it provides a version of ``gfortran`` with
   necessary changes for this platform that are not in a released upstream
   version of GCC. (The ``gfortran`` package that comes with the Sage
-  distribution is not suitable for the M1.)
+  distribution is not suitable for the M1/M2.)
 
 If your Mac uses the Intel (x86_64) architecture:
 
@@ -184,14 +184,20 @@ in the Installation Guide.
 
     - Compilers: `gcc`, `gfortran`, `g++` (GCC 8.x to 12.x and recent
       versions of Clang (LLVM) are supported).
-      See the Installation Manual for a discussion of suitable compilers.
+      See [build/pkgs/gcc/SPKG.rst](build/pkgs/gcc/SPKG.rst) and
+      [build/pkgs/gfortran/SPKG.rst](build/pkgs/gfortran/SPKG.rst)
+      for a discussion of suitable compilers.
 
     - Build tools: GNU `make`, GNU `m4`, `perl` (including
       ``ExtUtils::MakeMaker``), `ranlib`, `git`, `tar`, `bc`.
+      See [build/pkgs/_prereq/SPKG.rst](build/pkgs/_prereq/SPKG.rst) for
+      more details.
 
     - Python 3.4 or later, or Python 2.7, a full installation including
       `urllib`; but ideally version 3.8.x, 3.9.x, or 3.10.x, which
       will avoid having to build Sage's own copy of Python 3.
+      See [build/pkgs/python3/SPKG.rst](build/pkgs/python3/SPKG.rst)
+      for more details.
 
     We have collected lists of system packages that provide these build
     prerequisites. See, in the folder

diff --git a/VERSION.txt b/VERSION.txt
@@ -1 +1 @@
-SageMath version 9.8.beta0, Release Date: 2022-09-25
+SageMath version 9.8.beta1, Release Date: 2022-09-29
diff --git a/build/bin/sage-dist-helpers b/build/bin/sage-dist-helpers
@@ -290,6 +290,8 @@ sdh_pip_install() {
 
 sdh_pip_editable_install() {
     echo "Installing $PKG_NAME (editable mode)"
+    # Until https://trac.sagemath.org/ticket/34209 switches us to PEP 660 editable wheels
+    export SETUPTOOLS_ENABLE_FEATURES=legacy-editable
     python3 -m pip install --verbose --no-deps --no-index --no-build-isolation --isolated --editable "$@" || \
         sdh_die "Error installing $PKG_NAME"
 }

diff --git a/build/make/Makefile.in b/build/make/Makefile.in
@@ -430,7 +430,7 @@ define SET_SAGE_CHECK
 $(eval SAGE_CHECK_$(1) := $(2))
 endef
 # Set defaults
-$(foreach pkgname, $(NORMAL_PACKAGES),\
+$(foreach pkgname, $(NORMAL_PACKAGES) $(SCRIPT_PACKAGES),\
 	$(eval $(call SET_SAGE_CHECK,$(pkgname),$(SAGE_CHECK))))
 
 # Parsing the SAGE_CHECK_PACKAGES variable:
@@ -460,7 +460,7 @@ $(foreach clause, $(SAGE_CHECK_PACKAGES_sep),					\
 	       $(eval $(call SET_SAGE_CHECK,$(subst ?,,$(clause)),warn)),	\
 	       $(eval $(call SET_SAGE_CHECK,$(clause),yes)))))
 debug-check:
-	@echo $(foreach pkgname, $(NORMAL_PACKAGES), SAGE_CHECK_$(pkgname) = $(SAGE_CHECK_$(pkgname)))
+	@echo $(foreach pkgname, $(NORMAL_PACKAGES) $(SCRIPT_PACKAGES), SAGE_CHECK_$(pkgname) = $(SAGE_CHECK_$(pkgname)))
 
 
 #==============================================================================
@@ -676,7 +676,7 @@ $(1)-$(4)-no-deps:
 		. '$$(SAGE_ROOT)/build/bin/sage-build-env' && \
 		SAGE_SPKG_WHEELS=$$($(4))/var/lib/sage/wheels \
 		SAGE_INST_LOCAL=$$($(4)) \
-		sage-logger -p '$$(SAGE_ROOT)/build/pkgs/$(1)/spkg-install' '$$(SAGE_LOGS)/$(1)-$(2).log' && \
+		sage-logger -p 'SAGE_CHECK=$$(SAGE_CHECK_$(1)) $$(SAGE_ROOT)/build/pkgs/$(1)/spkg-install' '$$(SAGE_LOGS)/$(1)-$(2).log' && \
 	    rm -f "$$($(4))/$(SPKG_INST_RELDIR)/$(1)-*" && \
 	    touch "$$($(4))/$(SPKG_INST_RELDIR)/$(1)-$(2)"; \
 	else ( \

diff --git a/build/pkgs/_prereq/SPKG.rst b/build/pkgs/_prereq/SPKG.rst
@@ -4,5 +4,49 @@ _prereq: Represents system packages required for installing SageMath from source
 Description
 -----------
 
-This script package represents the minimal requirements (system packages)
+This dummy package represents the minimal requirements (system packages)
 for installing SageMath from source.
+
+In addition to standard :wikipedia:`POSIX <POSIX>` utilities
+and the :wikipedia:`bash <Bash_(Unix_shell)>` shell,
+the following standard command-line development tools must be installed on your
+computer:
+
+- **make**: GNU make, version 3.80 or later. Version 3.82 or later is recommended.
+- **m4**: GNU m4 1.4.2 or later (non-GNU or older versions might also work).
+- **perl**: version 5.8.0 or later.
+- **ar** and **ranlib**: can be obtained as part of GNU binutils.
+- **tar**: GNU tar version 1.17 or later, or BSD tar (as provided on macOS).
+- **python**: Python 3.4 or later, or Python 2.7.
+  (This range of versions is a minimal requirement for internal purposes of the SageMath
+  build system, which is referred to as ``sage-bootstrap-python``.)
+
+Other versions of these may work, but they are untested.
+
+On macOS, suitable versions of all of these tools are provided
+by the Xcode Command Line Tools.  To install them, open a terminal
+window and run ``xcode-select --install``; then click "Install" in the
+pop-up window.  If the Xcode Command Line Tools are already installed,
+you may want to check if they need to be updated by typing
+``softwareupdate -l``.
+
+On Linux, ``ar`` and ``ranlib`` are in the `binutils
+<https://www.gnu.org/software/binutils/>`_ package.  The other
+programs are usually located in packages with their respective names.
+
+On Redhat-derived systems not all perl components are installed by
+default and you might have to install the ``perl-ExtUtils-MakeMaker``
+package.
+
+To check if you have the above prerequisites installed, for example ``perl``,
+type::
+
+    $ command -v perl
+
+or::
+
+    $ which perl
+
+on the command line. If it gives an error (or returns nothing), then
+either ``perl`` is not installed, or it is installed but not in your
+:wikipedia:`PATH <PATH_%28variable%29>`.
diff --git a/build/pkgs/configure/checksums.ini b/build/pkgs/configure/checksums.ini
@@ -1,4 +1,4 @@
 tarball=configure-VERSION.tar.gz
-sha1=c2e1c4db6762c4d97d5127f5f056e46fe3d5a94d
-md5=70dcc35964e4234443c4e77beb2245d7
-cksum=2271434645
+sha1=73f9fe2ad9e2cfe224c7667a784144a1c520b9d8
+md5=8be336b502a66c5a410183be1eca2ca9
+cksum=42655200
diff --git a/build/pkgs/configure/package-version.txt b/build/pkgs/configure/package-version.txt
@@ -1 +1 @@
-04fbc829e9850eedf555acc683666c55cb7052d7
+51d49e23f3d3014e301fefcf72bf7a2a3fe0c4e0
diff --git a/build/pkgs/distlib/checksums.ini b/build/pkgs/distlib/checksums.ini
@@ -1,5 +1,5 @@
-tarball=distlib-VERSION.zip
-sha1=e7927ebc964676c17d466ed6a345222c34167a85
-md5=c886b7d99b4085c5d960e7435dcbd397
-cksum=10374426
-upstream_url=https://pypi.io/packages/source/d/distlib/distlib-VERSION.zip
+tarball=distlib-VERSION.tar.gz
+sha1=3a86d49dc17320325004564d0dc86afa808624bc
+md5=f60ba4e3f8e76c214d3d00b2227a16f7
+cksum=1543870863
+upstream_url=https://pypi.io/packages/source/d/distlib/distlib-VERSION.tar.gz
diff --git a/build/pkgs/distlib/package-version.txt b/build/pkgs/distlib/package-version.txt
@@ -1 +1 @@
-0.3.4
+0.3.6
diff --git a/build/pkgs/gcc/SPKG.rst b/build/pkgs/gcc/SPKG.rst
@@ -1,10 +1,70 @@
-gcc: The GNU Compiler Collection, including the C, C++ and Fortran compiler
-===========================================================================
+gcc: The GNU Compiler Collection or other suitable C and C++ compilers
+======================================================================
 
 Description
 -----------
 
-The GNU Compiler Collection, including the C, C++ and Fortran compiler.
+This package represents the required C and C++ compilers.
+
+- GCC (GNU Compiler Collection) versions 8.x to 12.x are supported.
+
+- Clang (LLVM) is also supported.
+
+The required Fortran compiler is represented by the package ``gfortran``.
+
+You can pass the names of compilers to use to ``./configure`` using
+the environment variables :envvar:`CC`, :envvar:`CXX`, and
+:envvar:`FC`, for C, C++, and Fortran compilers, respectively.
+
+For example, if your C compiler is ``clang``, your C++ compiler is
+``clang++``, and your Fortran compiler is ``flang``, then you would
+need to run::
+
+    $ ./configure CC=clang CXX=clang++ FC=flang
+
+Vendor and versions of the C and C++ compilers should match.
+
+Users of older Linux distributions (in particular, ``ubuntu-xenial``
+or older, ``debian-stretch`` or older, ``linuxmint-18`` or older)
+should upgrade their systems before attempting to install Sage from
+source.  Users of ``ubuntu-bionic``, ``linuxmint-19.x``, and
+``opensuse-15.x`` can install a versioned ``gcc`` system package
+and then use::
+
+    $ ./configure CC=gcc-8 CXX=g++-8 FC=gfortran-8
+
+or similar. Users on ``ubuntu`` can also install a modern compiler
+toolchain `using the ubuntu-toolchain-r ppa
+<https://askubuntu.com/questions/1140183/install-gcc-9-on-ubuntu-18-04/1149383#1149383>`_.
+On ``ubuntu-trusty``, also the package ``binutils-2.26`` is required;
+after installing it, make it available using ``export
+PATH="/usr/lib/binutils-2.26/bin:$PATH"``.  Instead of upgrading their
+distribution, users of ``centos-7`` can install a modern compiler
+toolchain `using Redhat's devtoolset
+<https://stackoverflow.com/a/67212990/557937>`_.
+
+This package uses the non-standard default
+``configure --with-system-gcc=force``, giving an error at ``configure``
+time when no suitable system compilers are configured.
+
+You can override this using ``./configure --without-system-gcc``.  In
+this case, Sage builds and installs the GNU Compiler Collection,
+including the C, C++ and Fortran compiler. This is not recommended.
+You will need suitable C and C++ compilers from which GCC can
+bootstrap itself. There are some known problems with old assemblers,
+in particular when building the ``ecm`` and ``fflas_ffpack``
+packages. You should ensure that your assembler understands all
+instructions for your processor. On Linux, this means you need a
+recent version of ``binutils`` (not provided by an SPKG); on macOS
+you need a recent version of Xcode.
+
+(Installing the
+``gfortran`` SPKG becomes a no-op in this case.)
+
+Building Sage from source on Apple Silicon (M1/M2) requires the use of
+Apple's Command Line Tools, and those tools include a suitable
+compiler. Sage's ``gcc`` SPKG is not suitable for M1/M2; building it
+will likely fail.
 
 License
 -------

diff --git a/build/pkgs/gfortran/SPKG.rst b/build/pkgs/gfortran/SPKG.rst
@@ -4,8 +4,21 @@ gfortran: Fortran compiler from the GNU Compiler Collection
 Description
 -----------
 
-The GNU Compiler Collection, including the C, C++ and Fortran compiler.
-This particular package is meant to only make gfortran available.
+This package represents the required Fortran compiler.
+
+Officially we support ``gfortran`` from `GNU Compiler Collection (GCC)
+<https://gcc.gnu.org/>`_.  It has also been reported that using ``flang``
+(from LLVM) might work.
+
+You can pass the names of compilers to use to ``./configure`` using
+the environment variables :envvar:`CC`, :envvar:`CXX`, and
+:envvar:`FC`, for C, C++, and Fortran compilers, respectively.
+
+For example, if your C compiler is ``clang``, your C++ compiler is
+``clang++``, and your Fortran compiler is ``flang``, then you would
+need to run::
+
+    $ ./configure CC=clang CXX=clang++ FC=flang
 
 License
 -------

diff --git a/build/pkgs/hatchling/checksums.ini b/build/pkgs/hatchling/checksums.ini
@@ -1,5 +1,5 @@
 tarball=hatchling-VERSION.tar.gz
-sha1=63ae7f29657e4d069c716e098a9ac8114d2f29f9
-md5=e05f845d94f400c3085bbaab21adcdbe
-cksum=3213522818
+sha1=8f102796a225fb18b0571a44308341c7211d5d94
+md5=c50eff4f711cee451037ec7eb780154a
+cksum=3180958969
 upstream_url=https://pypi.io/packages/source/h/hatchling/hatchling-VERSION.tar.gz
diff --git a/build/pkgs/hatchling/package-version.txt b/build/pkgs/hatchling/package-version.txt
@@ -1 +1 @@
-1.3.1
+1.10.0
diff --git a/build/pkgs/importlib_metadata/checksums.ini b/build/pkgs/importlib_metadata/checksums.ini
@@ -1,5 +1,5 @@
 tarball=importlib_metadata-VERSION.tar.gz
-sha1=7d15d8e06299a8f24e076600899aceee75ce8b0b
-md5=a605ba6ec315bc1324fd6b7210fe7c12
-cksum=448954927
+sha1=ec68de1ec1800048de8656b9d211e22b7fe7c53e
+md5=cfcf29185e13439c76d09c94bc8d81f4
+cksum=2134804316
 upstream_url=https://pypi.io/packages/source/i/importlib_metadata/importlib_metadata-VERSION.tar.gz
diff --git a/build/pkgs/importlib_metadata/package-version.txt b/build/pkgs/importlib_metadata/package-version.txt
@@ -1 +1 @@
-4.8.2
+4.12.0
diff --git a/build/pkgs/importlib_resources/checksums.ini b/build/pkgs/importlib_resources/checksums.ini
@@ -1,5 +1,5 @@
 tarball=importlib_resources-VERSION.tar.gz
-sha1=d1f2742895a68f3f8d19dd7285df1687877fb15a
-md5=5db738106ca7c05340495c36357986a2
-cksum=1338307365
+sha1=3b4b20fa0399e2fa21c7506be27a4b943495d3ad
+md5=3b6d98270d40b2ba7af1f8d09188f0c2
+cksum=2401793228
 upstream_url=https://pypi.io/packages/source/i/importlib_resources/importlib_resources-VERSION.tar.gz
diff --git a/build/pkgs/importlib_resources/package-version.txt b/build/pkgs/importlib_resources/package-version.txt
@@ -1 +1 @@
-5.2.2
+5.9.0
diff --git a/build/pkgs/jupyter_packaging/checksums.ini b/build/pkgs/jupyter_packaging/checksums.ini
@@ -1,5 +1,5 @@
 tarball=jupyter_packaging-VERSION.tar.gz
-sha1=c9b7dd75a70ad6a7c621588db410f07fba7e0fad
-md5=d30e6fb387d46398a3ab26765b8fa74f
-cksum=669146472
+sha1=092d249360aa56838a188decc4bcd09647fda4d9
+md5=9c6834023bd699bda5365ab7ed18bde2
+cksum=3308833189
 upstream_url=https://pypi.io/packages/source/j/jupyter_packaging/jupyter_packaging-VERSION.tar.gz
diff --git a/build/pkgs/jupyter_packaging/package-version.txt b/build/pkgs/jupyter_packaging/package-version.txt
@@ -1 +1 @@
-0.12.2
+0.12.3
diff --git a/build/pkgs/msolve/SPKG.rst b/build/pkgs/msolve/SPKG.rst
@@ -0,0 +1,21 @@
+msolve: Multivariate polynomial system solver
+=============================================
+
+Description
+-----------
+
+Open source C library implementing computer algebra algorithms for solving
+polynomial systems (with rational coefficients or coefficients in a prime field).
+
+License
+-------
+
+GPL v2+
+
+Upstream Contact
+----------------
+
+https://github.com/algebraic-solving/msolve
+
+Upstream does not make source tarballs.
+We make tarballs from the fork https://github.com/mkoeppe/msolve (branch 0.4.4+sage)
diff --git a/build/pkgs/msolve/checksums.ini b/build/pkgs/msolve/checksums.ini
@@ -0,0 +1,5 @@
+tarball=msolve-VERSION.tar.gz
+sha1=5b227de8b222bfe8d143e1d7ea77ad71cd209dc8
+md5=2f34bd9ccb089688ae169201281108dc
+cksum=941373315
+upstream_url=https://trac.sagemath.org/raw-attachment/ticket/31664/msolve-VERSION.tar.gz
diff --git a/build/pkgs/msolve/dependencies b/build/pkgs/msolve/dependencies
@@ -0,0 +1,4 @@
+$(MP_LIBRARY) flint mpfr
+
+----------
+All lines of this file are ignored except the first.
diff --git a/build/pkgs/msolve/package-version.txt b/build/pkgs/msolve/package-version.txt
@@ -0,0 +1 @@
+0.4.4+sage-2022-09-11
diff --git a/build/pkgs/msolve/spkg-install.in b/build/pkgs/msolve/spkg-install.in
@@ -0,0 +1,4 @@
+cd src
+sdh_configure
+sdh_make
+sdh_make_install
diff --git a/build/pkgs/msolve/type b/build/pkgs/msolve/type
@@ -0,0 +1 @@
+optional
diff --git a/build/pkgs/numpy/checksums.ini b/build/pkgs/numpy/checksums.ini
@@ -1,5 +1,5 @@
-tarball=numpy-VERSION.zip
-sha1=3ac08064b2ec8db8fe4870c2545c9d154f46bb30
-md5=b44849506fbb54cdef9dbb435b2b1987
-cksum=735479084
-upstream_url=https://pypi.io/packages/source/n/numpy/numpy-VERSION.zip
+tarball=numpy-VERSION.tar.gz
+sha1=570c995d7b155c7e4ac43bc46594172cedf1e4fa
+md5=6efc60a3f6c1b74c849d53fbcc07807b
+cksum=3973735135
+upstream_url=https://pypi.io/packages/source/n/numpy/numpy-VERSION.tar.gz
diff --git a/build/pkgs/numpy/package-version.txt b/build/pkgs/numpy/package-version.txt
@@ -1 +1 @@
-1.22.4
+1.23.3