Merge pull request #149 from samply/fix/tnm_query

feat: add product of tmn-c and tmn-p
samply · Dec 2, 2024 · 1c91448 · 1c91448
2 parents 066ba85 + a7c4def
commit 1c91448
Showing 1 changed file with 27 additions and 3 deletions.
diff --git a/packages/lib/src/cql-translator-service/ast-to-cql-translator.ts b/packages/lib/src/cql-translator-service/ast-to-cql-translator.ts
@@ -136,9 +136,7 @@ const getSingleton = (criterion: AstBottomLayerValue): string => {
                 case "observationMolecularMarkerDNAchange":
                 case "observationMolecularMarkerSeqRefNCBI":
                 case "observationMolecularMarkerEnsemblID":
-                case "department":
-                case "TNMp":
-                case "TNMc": {
+                case "department": {
                     if (typeof criterion.value === "string") {
                         // TODO: Check if we really need to do this or we can somehow tell cql to do that expansion it self
                         if (
@@ -219,7 +217,33 @@ const getSingleton = (criterion: AstBottomLayerValue): string => {
 
                     break;
                 }
+                case "TNMp":
+                case "TNMc": {
+                    if (typeof criterion.value === "string") {
+                        expression += "(";
+
+                        expression += substituteCQLExpression(
+                            criterion.key,
+                            myCriterion.alias,
+                            myCQL,
+                            criterion.value as string,
+                        );
+                        expression += ") or (";
+
+                        const myCQL2: string = cqltemplate.get(
+                            myCriterion.type == "TNMc" ? "TNMp" : "TNMc",
+                        );
 
+                        expression += substituteCQLExpression(
+                            criterion.key,
+                            myCriterion.alias,
+                            myCQL2,
+                            criterion.value as string,
+                        );
+                        expression += ")";
+                    }
+                    break;
+                }
                 case "conditionRangeDate": {
                     expression += substituteRangeCQLExpression(
                         criterion,