Remove unnecessary ariba run option

Former-commit-id: 7c42388
sanger-bentley-group · Aug 23, 2023 · 5daaeea · 5daaeea
1 parent c7c1ddc
commit 5daaeea
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/modules/amr.nf b/modules/amr.nf
@@ -90,7 +90,7 @@ process OTHER_RESISTANCE {
     script:
     report_debug='result/debug.report.tsv'
     """
-    ariba run --nucmer_min_id 80 --assembled_threshold 0 "$ariba_database/$database" "$read1" "$read2" result
+    ariba run --nucmer_min_id 80 "$ariba_database/$database" "$read1" "$read2" result
     """
 }