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Prefilter optimisation #47

Merged
merged 14 commits into from
Nov 4, 2013
Merged

Prefilter optimisation #47

merged 14 commits into from
Nov 4, 2013

Commits on Oct 31, 2013

  1. break up single large groups

    @andrewjpage
    andrewjpage committed Oct 31, 2013
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  2. filter out full clusters

    @andrewjpage
    andrewjpage committed Oct 31, 2013
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  3. include the gene name of the group

    @andrewjpage
    andrewjpage committed Oct 31, 2013
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Commits on Nov 1, 2013

  1. increase number of results returned by blast

    @andrewjpage
    andrewjpage committed Nov 1, 2013
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  2. remove full clusters

    @andrewjpage
    andrewjpage committed Nov 1, 2013
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  3. filter out low blastp matches

    @andrewjpage
    andrewjpage committed Nov 1, 2013
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  4. pre filter with cdhit for full clusters

    @andrewjpage
    andrewjpage committed Nov 1, 2013
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  5. recombine groups from cdhit

    @andrewjpage
    andrewjpage committed Nov 1, 2013
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Commits on Nov 4, 2013

  1. increase number of iterations of cdhit

    @andrewjpage
    andrewjpage committed Nov 4, 2013
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  2. dont filter blast results

    @andrewjpage
    andrewjpage committed Nov 4, 2013
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  3. remove redirction from blastp

    @andrewjpage
    andrewjpage committed Nov 4, 2013
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  4. return 1000 retults

    @andrewjpage
    andrewjpage committed Nov 4, 2013
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  5. use HSP scoring with no space

    @andrewjpage
    andrewjpage committed Nov 4, 2013
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  6. cdhit loop counter in wrong format

    @andrewjpage
    andrewjpage committed Nov 4, 2013
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