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496468: Allow '?' in fasta input #35

Merged
merged 4 commits into from
Dec 2, 2015
Merged

496468: Allow '?' in fasta input #35

merged 4 commits into from
Dec 2, 2015

Commits on Dec 2, 2015

  1. Create is_unknown function rather than long ifs

    @bewt85
    bewt85 committed Dec 2, 2015
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  2. '*' is not an unknown base 

    '*' is a placeholder in the reference sequence indicating a snp in that
position
    @bewt85
    bewt85 committed Dec 2, 2015
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  3. reuse is_unknown to test other bases

    @bewt85
    bewt85 committed Dec 2, 2015
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  4. Allow '?' as unknown character in fasta input

    @bewt85
    bewt85 committed Dec 2, 2015
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