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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,20 @@ | ||
| # https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates | ||
|
|
||
| version: 2 | ||
| updates: | ||
| # Gotta Catch 'Em All! (i.e. don't wait and propose them only "trickled") | ||
| open-pull-requests-limit: 99 | ||
|
|
||
| - package-ecosystem: gradle | ||
| directory: / | ||
| schedule: | ||
| interval: weekly | ||
| day: monday | ||
| time: "04:00" | ||
|
|
||
| - package-ecosystem: github-actions | ||
| directory: / | ||
| schedule: | ||
| interval: weekly | ||
| day: monday | ||
| time: "04:00" |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,51 @@ | ||
| name: "CodeQL" | ||
|
|
||
| on: | ||
| push: | ||
| branches: [ "master" ] | ||
| pull_request: | ||
| # The branches below must be a subset of the branches above | ||
| branches: [ "master" ] | ||
| schedule: | ||
| - cron: '32 13 * * 2' | ||
|
|
||
| jobs: | ||
| analyze: | ||
| name: Analyze | ||
| runs-on: ubuntu-22.04-64core | ||
| timeout-minutes: 60 | ||
| permissions: | ||
| actions: read | ||
| contents: read | ||
| security-events: write | ||
|
|
||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| language: [ 'java' ] | ||
|
|
||
| steps: | ||
| - name: Checkout repository | ||
| uses: actions/checkout@v3 | ||
|
|
||
| - name: Switch to Java 17 from Eclipse Temurin distro | ||
| uses: actions/setup-java@v3 | ||
| with: | ||
| java-version: 17 | ||
| distribution: temurin | ||
|
|
||
| - name: Initialize CodeQL | ||
| uses: github/codeql-action/init@v2 | ||
| with: | ||
| languages: ${{ matrix.language }} | ||
|
|
||
| # TODO: use Autobuild instead of ./gradlew after https://github.com/github/codeql-action/issues/1417 is fixed | ||
| # - name: Autobuild | ||
| # uses: github/codeql-action/autobuild@v2 | ||
| - name: Build with Gradle | ||
| run: ./gradlew --scan --full-stacktrace -Dorg.gradle.dependency.verification=off compileDebugAndroidTestSources | ||
|
|
||
| - name: Perform CodeQL Analysis | ||
| uses: github/codeql-action/analyze@v2 | ||
| with: | ||
| category: "/language:${{matrix.language}}" |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,34 @@ | ||
| { | ||
| "resourceType": "Questionnaire", | ||
| "item": [ | ||
| { | ||
| "extension": [ | ||
| { | ||
| "url": "http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-answerExpression", | ||
| "valueExpression": { | ||
| "language": "application/x-fhir-query", | ||
| "expression": "Task?subject=Patient/P1&code=33879002&status=ready&_sort=period" | ||
| } | ||
| }, | ||
| { | ||
| "url": "http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-choiceColumn", | ||
| "extension": [ | ||
| { | ||
| "url": "path", | ||
| "valueString": "description + ' - ' + reasonCode.coding.where(system='http://snomed.info/sct').display" | ||
| }, | ||
| { | ||
| "url": "forDisplay", | ||
| "valueBoolean": true | ||
| } | ||
| ] | ||
| } | ||
| ], | ||
| "linkId": "vaccines", | ||
| "text": "Which vaccine tasks were completed?", | ||
| "type": "reference", | ||
| "required": true, | ||
| "repeats": true | ||
| } | ||
| ] | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,116 @@ | ||
| { | ||
| "resourceType": "Bundle", | ||
| "entry": [ | ||
| { | ||
| "resource": { | ||
| "resourceType" : "Patient", | ||
| "id" : "P1" | ||
| } | ||
| }, | ||
| { | ||
| "resource": { | ||
| "resourceType": "Task", | ||
| "id": "b8e13d21-1a62-4172-a9ef-57670e6ac238", | ||
| "status": "ready", | ||
| "code": { | ||
| "coding": [ | ||
| { | ||
| "system": "http://snomed.info/sct", | ||
| "code": "33879002", | ||
| "display": "Vaccination routine" | ||
| } | ||
| ] | ||
| }, | ||
| "description": "BCG at birth", | ||
| "for": { | ||
| "reference": "Patient/P1" | ||
| }, | ||
| "reasonCode": { | ||
| "coding": [ | ||
| { | ||
| "system": "http://snomed.info/sct", | ||
| "code": "42284007", | ||
| "display": "BCG vaccine" | ||
| }, | ||
| { | ||
| "system": "https://smartregister.org/immunization/vaccine-codes", | ||
| "code": "bcg", | ||
| "display": "BCG" | ||
| } | ||
| ], | ||
| "text": "BCG" | ||
| } | ||
| } | ||
| }, | ||
| { | ||
| "resource": { | ||
| "resourceType": "Task", | ||
| "id": "4090ba9a-fbbb-4634-a06d-0cbe938ab090", | ||
| "status": "cancelled", | ||
| "code": { | ||
| "coding": [ | ||
| { | ||
| "system": "http://snomed.info/sct", | ||
| "code": "33879002", | ||
| "display": "Vaccination routine" | ||
| } | ||
| ] | ||
| }, | ||
| "description": "OPV 0 at birth", | ||
| "for": { | ||
| "reference": "Patient/P1" | ||
| }, | ||
| "reasonCode": { | ||
| "coding": [ | ||
| { | ||
| "system": "http://snomed.info/sct", | ||
| "code": "111164008", | ||
| "display": "Poliovirus vaccine" | ||
| }, | ||
| { | ||
| "system": "https://smartregister.org/immunization/vaccine-codes", | ||
| "code": "opv0", | ||
| "display": "OPV 0" | ||
| } | ||
| ], | ||
| "text": "OPV 0" | ||
| } | ||
| } | ||
| }, | ||
| { | ||
| "resource": { | ||
| "resourceType": "Task", | ||
| "id": "087e82c6-e346-4725-8db1-7e10aec99be9", | ||
| "status": "ready", | ||
| "code": { | ||
| "coding": [ | ||
| { | ||
| "system": "http://snomed.info/sct", | ||
| "code": "33879002", | ||
| "display": "Vaccination routine" | ||
| } | ||
| ] | ||
| }, | ||
| "description": "OPV 1 at 6 weeks", | ||
| "for": { | ||
| "reference": "Patient/P1" | ||
| }, | ||
| "reasonCode": { | ||
| "coding": [ | ||
| { | ||
| "system": "http://snomed.info/sct", | ||
| "code": "111164008", | ||
| "display": "Poliovirus vaccine" | ||
| }, | ||
| { | ||
| "system": "https://smartregister.org/immunization/vaccine-codes", | ||
| "code": "opv1", | ||
| "display": "OPV 1" | ||
| } | ||
| ], | ||
| "text": "OPV 1" | ||
| } | ||
| } | ||
| } | ||
| ] | ||
| } |
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