updates to model card example to include preprocessing function example #782

Workflow file for this run

.github/workflows/build-test-deploy.yml at 2bd7d80

	name: "Build"
	on: [push, workflow_dispatch]
	jobs:
	codeanalysis:
	name: "Code Quality"
	runs-on: ubuntu-latest

	steps:
	- name: Checkout repository
	uses: actions/checkout@v3

	- name: Black
	uses: psf/black@stable
	with:
	src: "./src ./tests"

	test:
	name: "Test"
	runs-on: ${{ matrix.os-version }}
	env:
	LANG: en_US.UTF-8
	strategy:
	matrix:
	python-version: ['3.8', '3.9', '3.10', '3.11']
	os-version: ['ubuntu-20.04', 'windows-latest', 'macos-latest']
	# Pinned Ubuntu version to 20.04 since no Python 3.6 builds available on ubuntu-latest (22.04) as of 2022-12-7.
	# os-version: [ubuntu-latest, windows-latest, macos-latest]

	steps:
	- name: Checkout repository
	uses: actions/checkout@v3

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}

	- name: Install dependencies (Ubuntu)
	if: startsWith(matrix.os-version, 'ubuntu')
	run: \|
	sudo apt-get update
	sudo apt-get install build-essential libkrb5-dev

	- name: Install dependencies (Common)
	run: \|
	# Setup tox & code coverage
	pip install --upgrade pip
	pip install tox tox-gh-actions pytest pytest-cov 'scikit-learn<=1.5.0' 'numpy<2.0.0'

	- name: Run Tests
	run: \|
	tox

	# Separate upload task for unit test coverage allows for flagged analysis of test coverage
	- name: Upload Unit Test Coverage
	if: startsWith(matrix.os-version, 'ubuntu')
	uses: codecov/codecov-action@v3
	with:
	directory: ./.reports/
	fail_ci_if_error: false
	file: unit.xml
	flags: unit
	verbose: true

	# Separate upload task for integration test coverage allows for flagged analysis of test coverage
	- name: Upload Integration Test Coverage
	if: startsWith(matrix.os-version, 'ubuntu')
	uses: codecov/codecov-action@v3
	with:
	directory: ./.reports/
	fail_ci_if_error: false
	file: integration.xml
	flags: integration
	verbose: true

	# Uncomment when scenario test cases are working again
	# Separate upload task for scenario test coverage allows for flagged analysis of test coverage
	# - name: Upload Scenario Test Coverage
	# if: matrix.os-version == 'ubuntu-latest'
	# uses: codecov/codecov-action@v3
	# with:
	# directory: ./.reports/
	# fail_ci_if_error: true
	# file: scenarios.xml
	# flags: scenarios
	# verbose: true

	gh-pages:
	name: "Build Documentation"
	runs-on: ubuntu-latest
	needs: test
	if: startsWith(github.ref, 'refs/tags/') # run only on tagged commits

	steps:
	- name: Checkout repository
	uses: actions/checkout@v3

	- name: Set up Python
	uses: actions/setup-python@v2
	with:
	python-version: 3.9

	- name: Setup environment
	run: \|
	mv doc docs
	sudo apt-get install build-essential
	pip install sphinx six pyyaml pandas pydata-sphinx-theme numpydoc

	- name: Check documentation
	uses: ammaraskar/sphinx-problem-matcher@master

	- name: Build documentation
	run: sphinx-build -Ean -b html -j auto -D todo_include_todos=0 ./docs ./docs/_build/html

	- name: Archive artifacts
	uses: actions/upload-artifact@v4
	with:
	name: html-docs
	path: ./docs/_build/html

	# Build a package for distribution through PyPI.org (pip install sasctl)
	build_pypi:
	name: "Build PyPI Package"
	runs-on: ubuntu-latest
	needs: test
	if: startsWith(github.ref, 'refs/tags/') # run only on tagged commits

	steps:
	- name: Checkout repository
	uses: actions/checkout@v3

	- name: Setup Python
	uses: actions/setup-python@v2

	- name: Install dependencies
	run: \|
	pip install --upgrade pip
	pip install setuptools wheel twine

	- name: Build Package
	run: \|
	python setup.py sdist bdist_wheel

	- name: Extract Changes
	shell: python
	run: \|
	import os, re
	tag_name = os.environ['GITHUB_REF'].replace('refs/tags/', '')
	changes = ''
	with open('CHANGELOG.md') as f:
	lines = f.read()
	match = re.search('%s [()\d\-\s]*' % tag_name, lines)
	if match:
	lines = lines[match.end():]
	changes = re.split('-----+', lines)[0].split('\n')
	changes = '\n'.join(changes[:-2])
	with open('release_notes.md', 'w') as f:
	f.write(changes)

	- name: Archive distribution artifacts
	# Archive distribution files for use by auto (or manual) PyPI upload
	uses: actions/upload-artifact@v4
	with:
	name: pypi-dist
	path: ./dist

	- name: Archive changelog artifacts
	uses: actions/upload-artifact@v4
	with:
	name: release_notes
	path: release_notes.md

	# Build a package for distribution through Anaconda.org (conda install sasctl)
	build_conda:
	name: "Build Conda Package"
	runs-on: ubuntu-latest
	needs: test
	if: startsWith(github.ref, 'refs/tags/') # run only on tagged commits

	steps:
	# Setup Miniconda
	- uses: conda-incubator/setup-miniconda@v2
	with:
	auto-update-conda: true

	- name: Install conda-build
	shell: bash -l {0}
	run: \|
	conda install conda-build

	- name: Checkout repository
	uses: actions/checkout@v3

	# Build package and store results in .build folder
	- name: Build package
	shell: bash -l {0}
	run: \|
	conda build --output-folder .build .conda

	# Archive distribution files. Will upload in a downstream job.
	- name: Archive distribution artifacts
	uses: actions/upload-artifact@v4
	with:
	name: conda-dist
	path: .build


	# Publishes the new package to PyPI, uploads the latest documentation to GitHub Pages
	# and creates a new release with change notes on GitHub.
	publish:
	name: "Publish"
	runs-on: ubuntu-latest
	needs: [gh-pages, build_pypi, build_conda]

	steps:
	- name: Download documentation
	uses: actions/download-artifact@v4
	with:
	name: html-docs
	path: ./html-docs

	- name: Download release
	uses: actions/download-artifact@v4
	with:
	name: pypi-dist
	path: ./dist

	- name: Download release notes
	uses: actions/download-artifact@v4
	with:
	name: release_notes

	- name: Zip Documentation
	run: zip -r documentation.zip ./html-docs

	- name: Display structure of downloaded files
	run: ls -R

	# Create a draft release on GitHub
	- name: Create Release
	id: create_release
	uses: softprops/action-gh-release@v1
	with:
	draft: true
	body_path: release_notes.md
	body: ""
	files: documentation.zip

	# Publish the documentation to GitHub Pages
	- name: Deploy documentation
	uses: peaceiris/actions-gh-pages@v3
	with:
	github_token: ${{ secrets.GITHUB_TOKEN }}
	publish_dir: ./html-docs

	- name: Publish to PyPI
	uses: pypa/gh-action-pypi-publish@release/v1
	with:
	user: __token__
	password: ${{ secrets.PYPI_API_TOKEN }}
	verbose: true

	# Publish the release on GitHub (remove draft status)
	- name: Publish release
	uses: StuYarrow/publish-release@v1
	env:
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
	with:
	id: ${{ steps.create_release.outputs.id }}


	# Uploads the package to Anaconda.
	# NOTE: could be merged with `publish` job above. Left as a separate, final job since it
	# involves multiple steps to setup the environment and if this job fails, the package
	# has already been made available through pip, and the release info published.
	upload_conda:
	name: "Upload Conda Package"
	runs-on: ubuntu-latest
	needs: [publish]

	steps:
	# Setup Miniconda
	- uses: conda-incubator/setup-miniconda@v2
	with:
	auto-update-conda: true

	# Setup Anaconda client (required for upload)
	- name: Install anaconda client
	shell: bash -l {0}
	run: \|
	conda install anaconda-client

	# Download release files
	- name: Download release
	uses: actions/download-artifact@v4
	with:
	name: conda-dist
	path: ./dist

	# Upload release to Anaconda.org
	- name: Upload release
	shell: bash -l {0}
	run: \|
	anaconda -t ${{ secrets.ANACONDA_TOKEN }} upload -u sas-institute ./dist/noarch/sasctl-*.tar.bz2

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updates to model card example to include preprocessing function example #782

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updates to model card example to include preprocessing function example #782

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Workflow file for this run